Strain Fitness in Pseudomonas putida KT2440 around PP_4693

Experiment: 1-Pentanol 0.3 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4692 and PP_4693 are separated by 210 nucleotidesPP_4693 and PP_4694 are separated by 48 nucleotides PP_4692: PP_4692 - putative aspartate/tyrosine/aromatic aminotransferase, at 5,330,388 to 5,331,560 _4692 PP_4693: PP_4693 - RNA polymerase-binding transcription factor DksA, at 5,331,771 to 5,332,217 _4693 PP_4694: PP_4694 - Glutamyl-Q tRNA(Asp) synthetase, at 5,332,266 to 5,333,168 _4694 Position (kb) 5331 5332 5333Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 5330.771 kb on - strand, within PP_4692at 5330.771 kb on - strand, within PP_4692at 5330.771 kb on - strand, within PP_4692at 5330.771 kb on - strand, within PP_4692at 5330.857 kb on + strand, within PP_4692at 5330.870 kb on + strand, within PP_4692at 5330.870 kb on + strand, within PP_4692at 5330.926 kb on + strand, within PP_4692at 5330.926 kb on + strand, within PP_4692at 5330.926 kb on + strand, within PP_4692at 5330.926 kb on + strand, within PP_4692at 5330.927 kb on - strand, within PP_4692at 5330.941 kb on + strand, within PP_4692at 5330.942 kb on - strand, within PP_4692at 5330.942 kb on - strand, within PP_4692at 5330.942 kb on - strand, within PP_4692at 5331.079 kb on + strand, within PP_4692at 5331.109 kb on + strand, within PP_4692at 5331.109 kb on + strand, within PP_4692at 5331.109 kb on + strand, within PP_4692at 5331.109 kb on + strand, within PP_4692at 5331.110 kb on - strand, within PP_4692at 5331.272 kb on + strand, within PP_4692at 5331.272 kb on + strand, within PP_4692at 5331.273 kb on - strand, within PP_4692at 5331.273 kb on - strand, within PP_4692at 5331.367 kb on + strand, within PP_4692at 5331.368 kb on - strand, within PP_4692at 5331.368 kb on - strand, within PP_4692at 5331.547 kb on + strandat 5331.547 kb on + strandat 5331.548 kb on - strandat 5331.595 kb on + strandat 5331.595 kb on + strandat 5331.596 kb on - strandat 5331.639 kb on + strandat 5331.673 kb on + strandat 5331.674 kb on - strandat 5331.674 kb on - strandat 5331.674 kb on - strandat 5331.766 kb on + strandat 5331.766 kb on + strandat 5331.767 kb on - strandat 5331.767 kb on - strandat 5331.767 kb on - strandat 5331.781 kb on + strandat 5331.810 kb on + strandat 5331.811 kb on - strandat 5331.825 kb on + strand, within PP_4693at 5331.825 kb on + strand, within PP_4693at 5331.825 kb on + strand, within PP_4693at 5331.826 kb on - strand, within PP_4693at 5331.849 kb on + strand, within PP_4693at 5331.849 kb on + strand, within PP_4693at 5331.849 kb on + strand, within PP_4693at 5331.849 kb on + strand, within PP_4693at 5331.849 kb on + strand, within PP_4693at 5331.849 kb on + strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.942 kb on - strand, within PP_4693at 5331.942 kb on - strand, within PP_4693at 5331.942 kb on - strand, within PP_4693at 5332.090 kb on - strand, within PP_4693at 5332.149 kb on - strand, within PP_4693at 5332.176 kb on + strandat 5332.263 kb on + strandat 5332.263 kb on + strandat 5332.263 kb on + strandat 5332.263 kb on + strandat 5332.263 kb on + strandat 5332.263 kb on + strandat 5332.264 kb on - strandat 5332.264 kb on - strandat 5332.264 kb on - strandat 5332.264 kb on - strandat 5332.264 kb on - strandat 5332.265 kb on + strandat 5332.265 kb on + strandat 5332.266 kb on - strandat 5332.296 kb on + strandat 5332.296 kb on + strandat 5332.297 kb on - strandat 5332.508 kb on - strand, within PP_4694at 5332.508 kb on - strand, within PP_4694at 5332.533 kb on + strand, within PP_4694at 5332.533 kb on + strand, within PP_4694at 5332.533 kb on + strand, within PP_4694at 5332.533 kb on + strand, within PP_4694at 5332.534 kb on - strand, within PP_4694at 5332.534 kb on - strand, within PP_4694at 5332.546 kb on + strand, within PP_4694at 5332.547 kb on - strand, within PP_4694at 5332.611 kb on + strand, within PP_4694at 5332.611 kb on + strand, within PP_4694at 5332.612 kb on - strand, within PP_4694at 5332.612 kb on - strand, within PP_4694at 5332.623 kb on + strand, within PP_4694at 5332.623 kb on + strand, within PP_4694at 5332.623 kb on + strand, within PP_4694at 5332.624 kb on - strand, within PP_4694at 5332.624 kb on - strand, within PP_4694at 5332.624 kb on - strand, within PP_4694at 5332.698 kb on + strand, within PP_4694at 5332.698 kb on + strand, within PP_4694at 5332.728 kb on + strand, within PP_4694at 5332.728 kb on + strand, within PP_4694at 5332.788 kb on + strand, within PP_4694at 5332.789 kb on - strand, within PP_4694at 5332.789 kb on - strand, within PP_4694at 5332.789 kb on - strand, within PP_4694at 5332.789 kb on - strand, within PP_4694at 5332.795 kb on - strand, within PP_4694at 5332.795 kb on - strand, within PP_4694at 5332.795 kb on - strand, within PP_4694at 5332.887 kb on + strand, within PP_4694at 5332.888 kb on - strand, within PP_4694at 5332.888 kb on - strand, within PP_4694at 5332.931 kb on + strand, within PP_4694at 5332.931 kb on + strand, within PP_4694at 5332.931 kb on + strand, within PP_4694at 5332.931 kb on + strand, within PP_4694at 5332.932 kb on - strand, within PP_4694at 5332.932 kb on - strand, within PP_4694at 5333.174 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol%
remove
5,330,771 - PP_4692 0.33 +1.2
5,330,771 - PP_4692 0.33 -0.3
5,330,771 - PP_4692 0.33 -1.0
5,330,771 - PP_4692 0.33 -0.7
5,330,857 + PP_4692 0.40 -0.3
5,330,870 + PP_4692 0.41 -0.0
5,330,870 + PP_4692 0.41 -0.0
5,330,926 + PP_4692 0.46 +0.8
5,330,926 + PP_4692 0.46 +0.4
5,330,926 + PP_4692 0.46 +0.2
5,330,926 + PP_4692 0.46 +0.2
5,330,927 - PP_4692 0.46 -0.2
5,330,941 + PP_4692 0.47 +0.1
5,330,942 - PP_4692 0.47 -0.3
5,330,942 - PP_4692 0.47 +0.4
5,330,942 - PP_4692 0.47 -0.0
5,331,079 + PP_4692 0.59 -0.2
5,331,109 + PP_4692 0.61 -0.9
5,331,109 + PP_4692 0.61 +0.0
5,331,109 + PP_4692 0.61 +0.5
5,331,109 + PP_4692 0.61 +0.1
5,331,110 - PP_4692 0.62 +0.4
5,331,272 + PP_4692 0.75 +0.4
5,331,272 + PP_4692 0.75 -1.1
5,331,273 - PP_4692 0.75 -0.5
5,331,273 - PP_4692 0.75 -0.1
5,331,367 + PP_4692 0.83 -0.1
5,331,368 - PP_4692 0.84 -1.3
5,331,368 - PP_4692 0.84 -1.0
5,331,547 + -0.0
5,331,547 + +0.9
5,331,548 - +0.6
5,331,595 + -0.5
5,331,595 + -0.9
5,331,596 - +0.4
5,331,639 + +0.6
5,331,673 + -1.0
5,331,674 - +4.4
5,331,674 - +4.9
5,331,674 - +5.1
5,331,766 + +4.8
5,331,766 + +3.1
5,331,767 - +4.7
5,331,767 - +5.1
5,331,767 - +4.9
5,331,781 + +6.1
5,331,810 + +6.3
5,331,811 - +5.2
5,331,825 + PP_4693 0.12 +5.3
5,331,825 + PP_4693 0.12 +5.1
5,331,825 + PP_4693 0.12 +5.8
5,331,826 - PP_4693 0.12 +2.7
5,331,849 + PP_4693 0.17 +5.3
5,331,849 + PP_4693 0.17 +5.7
5,331,849 + PP_4693 0.17 +5.2
5,331,849 + PP_4693 0.17 +5.0
5,331,849 + PP_4693 0.17 +5.5
5,331,849 + PP_4693 0.17 +5.9
5,331,850 - PP_4693 0.18 +5.3
5,331,850 - PP_4693 0.18 +5.2
5,331,850 - PP_4693 0.18 +3.8
5,331,850 - PP_4693 0.18 +5.2
5,331,850 - PP_4693 0.18 +2.5
5,331,850 - PP_4693 0.18 +5.8
5,331,850 - PP_4693 0.18 +4.7
5,331,850 - PP_4693 0.18 +4.9
5,331,942 - PP_4693 0.38 +5.3
5,331,942 - PP_4693 0.38 -2.1
5,331,942 - PP_4693 0.38 +5.5
5,332,090 - PP_4693 0.71 +5.7
5,332,149 - PP_4693 0.85 +6.2
5,332,176 + +5.9
5,332,263 + +0.0
5,332,263 + -0.1
5,332,263 + -0.0
5,332,263 + +1.0
5,332,263 + -0.3
5,332,263 + +0.3
5,332,264 - -0.6
5,332,264 - +0.2
5,332,264 - -0.2
5,332,264 - -0.6
5,332,264 - -0.2
5,332,265 + +0.2
5,332,265 + +0.1
5,332,266 - +0.5
5,332,296 + +0.9
5,332,296 + +0.2
5,332,297 - +0.5
5,332,508 - PP_4694 0.27 +0.6
5,332,508 - PP_4694 0.27 -0.5
5,332,533 + PP_4694 0.30 -0.5
5,332,533 + PP_4694 0.30 -0.6
5,332,533 + PP_4694 0.30 +0.2
5,332,533 + PP_4694 0.30 -0.6
5,332,534 - PP_4694 0.30 +0.3
5,332,534 - PP_4694 0.30 +0.3
5,332,546 + PP_4694 0.31 -0.0
5,332,547 - PP_4694 0.31 +0.1
5,332,611 + PP_4694 0.38 +0.3
5,332,611 + PP_4694 0.38 -0.0
5,332,612 - PP_4694 0.38 -0.3
5,332,612 - PP_4694 0.38 -0.6
5,332,623 + PP_4694 0.40 +0.7
5,332,623 + PP_4694 0.40 +0.6
5,332,623 + PP_4694 0.40 +0.5
5,332,624 - PP_4694 0.40 +0.2
5,332,624 - PP_4694 0.40 -0.2
5,332,624 - PP_4694 0.40 +0.1
5,332,698 + PP_4694 0.48 +0.3
5,332,698 + PP_4694 0.48 -0.4
5,332,728 + PP_4694 0.51 +0.0
5,332,728 + PP_4694 0.51 -0.1
5,332,788 + PP_4694 0.58 +0.4
5,332,789 - PP_4694 0.58 -0.2
5,332,789 - PP_4694 0.58 -0.1
5,332,789 - PP_4694 0.58 -0.2
5,332,789 - PP_4694 0.58 +0.9
5,332,795 - PP_4694 0.59 +0.3
5,332,795 - PP_4694 0.59 -0.0
5,332,795 - PP_4694 0.59 -0.6
5,332,887 + PP_4694 0.69 +0.6
5,332,888 - PP_4694 0.69 +0.4
5,332,888 - PP_4694 0.69 +2.0
5,332,931 + PP_4694 0.74 +0.8
5,332,931 + PP_4694 0.74 -1.3
5,332,931 + PP_4694 0.74 -2.7
5,332,931 + PP_4694 0.74 -0.0
5,332,932 - PP_4694 0.74 -0.4
5,332,932 - PP_4694 0.74 -0.4
5,333,174 + -0.1

Or see this region's nucleotide sequence