Strain Fitness in Pseudomonas putida KT2440 around PP_4392

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
4,982,907	+		PP_4390	0.48	+2.1
4,982,907	+		PP_4390	0.48	+2.0
4,982,907	+		PP_4390	0.48	+2.1
4,982,907	+		PP_4390	0.48	+2.0
4,982,908	-				+2.0
4,983,013	+		PP_4390	0.72	+2.6
4,983,014	-		PP_4390	0.72	+1.9
4,983,178	+				+1.8
4,983,228	+		PP_4391	0.21	+1.5
4,983,229	-		PP_4391	0.22	+1.6
4,983,229	-		PP_4391	0.22	+2.0
4,983,294	+		PP_4391	0.37	+1.7
4,983,295	-		PP_4391	0.38	+1.8
4,983,295	-		PP_4391	0.38	+2.8
4,983,438	+		PP_4391	0.73	+2.3
4,983,438	+		PP_4391	0.73	+2.1
4,983,438	+		PP_4391	0.73	+1.8
4,983,439	-		PP_4391	0.73	+1.8
4,983,439	-		PP_4391	0.73	+2.8
4,983,599	-				+0.1
4,983,599	-				-1.0
4,983,631	+				+2.2
4,983,828	-				-0.3
4,983,833	+				-0.3
4,983,833	+				+1.2
4,983,833	+				+0.1
4,983,833	+				+0.5
4,983,834	-				+0.2
4,983,834	-				-0.9
4,983,834	-				-0.8
4,983,873	+				+0.3
4,983,874	-				-0.6
4,983,874	-				+0.6
4,983,874	-				+0.3
4,983,874	-				+0.0
4,983,885	+				+2.0
4,983,885	+				+2.4
4,983,886	-				+0.6
4,983,966	+		PP_4392	0.11	+1.5
4,983,967	-		PP_4392	0.11	+1.6
4,983,967	-		PP_4392	0.11	+1.8
4,984,032	+		PP_4392	0.19	+0.0
4,984,032	+		PP_4392	0.19	+2.1
4,984,083	+		PP_4392	0.25	+1.3
4,984,083	+		PP_4392	0.25	+1.1
4,984,084	-		PP_4392	0.26	+1.2
4,984,084	-		PP_4392	0.26	+1.7
4,984,084	-		PP_4392	0.26	+1.7
4,984,084	-		PP_4392	0.26	+0.9
4,984,084	-		PP_4392	0.26	+0.9
4,984,174	-		PP_4392	0.36	+0.5
4,984,455	+		PP_4392	0.70	+1.4
4,984,456	-		PP_4392	0.71	+1.5
4,984,615	-		PP_4392	0.90	+1.6
4,984,615	-		PP_4392	0.90	+1.6
4,984,615	-		PP_4392	0.90	+1.9
4,984,615	-		PP_4392	0.90	+1.6
4,984,615	-		PP_4392	0.90	+0.2
4,984,615	-		PP_4392	0.90	+2.2
4,984,621	+				+2.0
4,984,622	-				+1.6
4,984,687	+				-0.3
4,984,693	+				+0.5
4,984,693	+				+1.1
4,984,694	-				+1.4
4,984,700	+				+0.8
4,984,701	-				+1.7
4,984,701	-				+0.4
4,984,877	+		PP_4393	0.13	+0.5
4,984,877	+		PP_4393	0.13	+1.0
4,984,877	+		PP_4393	0.13	+0.8
4,984,877	+		PP_4393	0.13	+1.0
4,984,933	-		PP_4393	0.19	+0.2
4,984,937	+		PP_4393	0.20	-0.8
4,984,937	+		PP_4393	0.20	+0.7
4,984,937	+				+0.8
4,984,937	+		PP_4393	0.20	+0.4
4,984,937	+		PP_4393	0.20	-0.3
4,984,937	+				+1.2
4,984,937	+		PP_4393	0.20	+1.1
4,984,937	+		PP_4393	0.20	+0.6
4,984,938	-		PP_4393	0.20	-0.3
4,984,940	-		PP_4393	0.20	-1.7
4,984,940	-		PP_4393	0.20	-3.5
4,985,029	+		PP_4393	0.30	+1.0
4,985,030	-		PP_4393	0.30	-0.2
4,985,076	+		PP_4393	0.35	+0.9
4,985,077	-		PP_4393	0.35	-1.3
4,985,284	+		PP_4393	0.57	+1.1
4,985,285	-		PP_4393	0.57	+1.1
4,985,553	+		PP_4393	0.86	+0.3
4,985,553	+		PP_4393	0.86	+0.7
4,985,553	+		PP_4393	0.86	-1.1
4,985,554	-		PP_4393	0.86	-0.1