Strain Fitness in Pseudomonas putida KT2440 around PP_4371

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
4,960,197	+		PP_4369	0.85	+2.2
4,960,199	+		PP_4369	0.85	+1.4
4,960,200	-		PP_4369	0.85	+1.1
4,960,200	-		PP_4369	0.85	+1.3
4,960,200	-		PP_4369	0.85	+1.2
4,960,200	-		PP_4369	0.85	+2.1
4,960,200	-		PP_4369	0.85	+1.4
4,960,200	-		PP_4369	0.85	+2.1
4,960,265	+		PP_4369	0.88	+1.8
4,960,475	+				+1.6
4,960,475	+				-0.0
4,960,476	-				+1.6
4,960,476	-				+2.4
4,960,514	+				+2.0
4,960,515	-				+1.4
4,960,538	-		PP_4370	0.16	+1.2
4,960,538	-		PP_4370	0.16	+0.9
4,960,738	+		PP_4370	0.76	+1.7
4,960,739	-		PP_4370	0.76	+2.2
4,960,739	-		PP_4370	0.76	+1.5
4,960,739	-		PP_4370	0.76	+1.5
4,960,739	-		PP_4370	0.76	+2.1
4,960,877	+				+2.2
4,961,422	+		PP_4371	0.25	+0.7
4,961,422	+		PP_4371	0.25	+0.7
4,961,422	+		PP_4371	0.25	+1.2
4,961,422	+		PP_4371	0.25	+0.9
4,961,423	-		PP_4371	0.25	+1.2
4,961,423	-		PP_4371	0.25	+1.3
4,961,423	-		PP_4371	0.25	+2.0
4,961,423	-		PP_4371	0.25	+1.0
4,961,423	-		PP_4371	0.25	+0.1
4,961,423	-		PP_4371	0.25	+0.8
4,961,581	+		PP_4371	0.37	+0.9
4,961,581	+		PP_4371	0.37	-1.3
4,961,581	+		PP_4371	0.37	+0.4
4,961,582	-		PP_4371	0.37	+0.0
4,961,582	-		PP_4371	0.37	+1.6
4,961,582	-		PP_4371	0.37	+0.4
4,961,651	+		PP_4371	0.42	+1.3
4,961,651	+		PP_4371	0.42	+1.0
4,961,652	-		PP_4371	0.42	+0.9
4,961,652	-		PP_4371	0.42	-0.7
4,961,982	+		PP_4371	0.66	-0.1
4,962,139	+		PP_4371	0.78	+0.9
4,962,140	-		PP_4371	0.78	+0.9
4,962,140	-		PP_4371	0.78	+0.6
4,962,313	-				-0.4
4,962,353	-				-0.3
4,962,438	+				+2.0
4,962,438	+				+2.0
4,962,438	+				+1.3
4,962,439	-				+0.6
4,962,439	-				+0.5
4,962,439	-				-0.6
4,962,493	+				+0.8
4,962,494	-				+0.5
4,962,596	-		PP_4372	0.13	+0.8
4,962,673	+		PP_4372	0.19	+0.7
4,962,688	-		PP_4372	0.21	-0.9
4,962,688	-		PP_4372	0.21	+0.1
4,963,038	+		PP_4372	0.49	+0.9
4,963,276	+		PP_4372	0.69	+0.9
4,963,277	-		PP_4372	0.69	+0.1
4,963,277	-		PP_4372	0.69	+0.3
4,963,277	-		PP_4372	0.69	+0.0