Strain Fitness in Pseudomonas putida KT2440 around PP_4366

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
4,954,588	+		PP_4364	0.48	+0.0
4,954,588	+		PP_4364	0.48	-0.2
4,954,589	-		PP_4364	0.49	-0.4
4,954,589	-		PP_4364	0.49	-1.1
4,954,589	-		PP_4364	0.49	+0.0
4,954,589	-		PP_4364	0.49	+0.2
4,954,645	+		PP_4364	0.67	+0.3
4,954,748	+				+1.2
4,954,784	+				-0.0
4,954,893	+				+0.3
4,954,894	-				-0.1
4,954,923	+				-0.4
4,954,923	+				+0.4
4,954,923	+				+1.1
4,954,923	+				+0.6
4,954,923	+				+0.8
4,954,923	+				+0.0
4,954,923	+				+0.2
4,954,923	+				-0.6
4,954,923	+				+1.8
4,954,923	+				-0.7
4,954,923	+				+0.2
4,954,923	+				+1.4
4,954,923	+				-1.4
4,954,924	-				+0.8
4,954,924	-				-0.7
4,954,924	-				+0.5
4,954,924	-				+0.2
4,954,924	-				-0.1
4,954,924	-				-0.2
4,954,924	-				+1.4
4,954,924	-				+0.6
4,954,924	-				+0.6
4,954,924	-				+0.4
4,954,924	-				+0.8
4,954,924	-				+0.0
4,954,924	-				-0.6
4,954,924	-				-0.4
4,954,925	+				-0.7
4,954,925	+				+0.5
4,954,926	-				+0.2
4,954,926	-				+0.9
4,955,022	-		PP_4365	0.22	+2.1
4,955,022	-		PP_4365	0.22	+1.5
4,955,022	-		PP_4365	0.22	+1.7
4,955,052	+		PP_4365	0.29	+0.9
4,955,052	+		PP_4365	0.29	+1.8
4,955,053	-		PP_4365	0.29	+2.6
4,955,069	-		PP_4365	0.32	+2.4
4,955,220	+		PP_4365	0.66	+1.8
4,955,379	+				+1.9
4,955,380	-				+0.2
4,955,525	+		PP_4366	0.10	+2.3
4,955,526	-		PP_4366	0.11	+2.0
4,955,526	-		PP_4366	0.11	+2.7
4,955,526	-		PP_4366	0.11	+1.4
4,955,526	-		PP_4366	0.11	+1.6
4,955,526	-		PP_4366	0.11	+2.3
4,955,526	-		PP_4366	0.11	+2.8
4,955,529	+		PP_4366	0.11	+1.8
4,955,529	+		PP_4366	0.11	+1.8
4,955,529	+		PP_4366	0.11	+2.3
4,955,530	-		PP_4366	0.11	+2.2
4,955,530	-		PP_4366	0.11	+1.4
4,955,530	-		PP_4366	0.11	+2.2
4,955,530	-		PP_4366	0.11	+1.5
4,955,530	-		PP_4366	0.11	+1.6
4,955,530	-		PP_4366	0.11	+1.8
4,955,703	-		PP_4366	0.23	+2.0
4,955,781	+		PP_4366	0.29	+1.2
4,955,781	+		PP_4366	0.29	+1.6
4,955,782	-		PP_4366	0.29	+1.6
4,955,782	-		PP_4366	0.29	+1.2
4,955,983	-		PP_4366	0.44	+2.0
4,956,003	+		PP_4366	0.45	+2.6
4,956,003	+		PP_4366	0.45	+2.1
4,956,003	+		PP_4366	0.45	+1.0
4,956,003	+		PP_4366	0.45	+1.5
4,956,003	+		PP_4366	0.45	+1.7
4,956,003	+		PP_4366	0.45	+2.1
4,956,004	-		PP_4366	0.45	+1.9
4,956,004	-		PP_4366	0.45	+1.7
4,956,004	-		PP_4366	0.45	+1.3
4,956,197	-		PP_4366	0.59	+2.1
4,956,248	-		PP_4366	0.63	+1.5
4,956,263	-		PP_4366	0.64	+1.1
4,956,279	+		PP_4366	0.65	+1.7
4,956,296	-		PP_4366	0.67	+2.0
4,956,485	-		PP_4366	0.80	+2.0
4,956,485	-		PP_4366	0.80	+1.9
4,956,559	-		PP_4366	0.86	+2.7
4,956,637	+				+2.0
4,956,638	-				+2.4
4,956,638	-				+1.8
4,956,693	+				+1.6
4,956,693	+				+2.0
4,956,694	-				+2.2
4,957,086	+		PP_4367	0.45	+1.6
4,957,087	-		PP_4367	0.46	+2.5
4,957,303	+		PP_4367	0.73	+1.2
4,957,304	-		PP_4367	0.73	+1.6
4,957,304	-		PP_4367	0.73	+2.6
4,957,304	-		PP_4367	0.73	+1.1
4,957,304	-		PP_4367	0.73	+2.1
4,957,561	+				+1.5
4,957,561	+				+2.1
4,957,562	-				+1.2
4,957,562	-				+1.0
4,957,562	-				+0.7
4,957,562	-				-0.3
4,957,562	-				+1.8
4,957,643	+				+1.8
4,957,677	-				+0.2
4,957,677	-				+1.0
4,957,677	-				+0.9
4,957,681	+				+1.6
4,957,681	+				+1.9
4,957,681	+				+1.7
4,957,681	+				+1.5
4,957,681	+				+1.3
4,957,681	+				+2.1
4,957,681	+				+1.8
4,957,682	-				+0.6
4,957,682	-				-0.3
4,957,682	-				+1.2
4,957,682	-				-0.4
4,957,682	-				-0.8
4,957,682	-				+0.3
4,957,682	-				+0.7
4,957,682	-				-1.2