Strain Fitness in Pseudomonas putida KT2440 around PP_4334

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
4,923,206	+		PP_4332	0.89	+1.5
4,923,206	+		PP_4332	0.89	+1.3
4,923,263	+				+1.8
4,923,502	-		PP_4333	0.23	-0.5
4,923,502	-		PP_4333	0.23	-0.0
4,923,502	-		PP_4333	0.23	-0.9
4,923,522	+		PP_4333	0.25	+1.5
4,923,522	+		PP_4333	0.25	+1.5
4,923,522	+		PP_4333	0.25	+2.2
4,923,523	-		PP_4333	0.25	-2.5
4,923,678	+		PP_4333	0.42	+1.7
4,923,678	+		PP_4333	0.42	+1.6
4,923,678	+		PP_4333	0.42	+1.2
4,923,678	+		PP_4333	0.42	+0.9
4,923,678	+		PP_4333	0.42	+1.8
4,923,679	-		PP_4333	0.42	-2.6
4,923,794	+		PP_4333	0.55	+1.7
4,923,950	+		PP_4333	0.73	+2.6
4,924,144	-				+0.3
4,924,221	-				+0.8
4,924,221	-				-0.1
4,924,251	-				-0.0
4,924,341	-		PP_4334	0.17	-1.8
4,924,341	-		PP_4334	0.17	+0.8
4,924,341	-		PP_4334	0.17	-1.2
4,924,351	+		PP_4334	0.18	+1.5
4,924,351	+		PP_4334	0.18	+1.7
4,924,351	+		PP_4334	0.18	+1.4
4,924,351	+		PP_4334	0.18	+1.6
4,924,351	+		PP_4334	0.18	+2.0
4,924,351	+		PP_4334	0.18	+1.7
4,924,351	+		PP_4334	0.18	+1.7
4,924,351	+		PP_4334	0.18	+1.0
4,924,351	+		PP_4334	0.18	+1.3
4,924,351	+		PP_4334	0.18	+1.7
4,924,351	-		PP_4334	0.18	-0.4
4,924,352	-		PP_4334	0.18	-1.0
4,924,352	-		PP_4334	0.18	-0.4
4,924,352	-		PP_4334	0.18	+0.3
4,924,352	-		PP_4334	0.18	-0.2
4,924,364	+		PP_4334	0.20	+2.0
4,924,364	+		PP_4334	0.20	+2.2
4,924,365	-		PP_4334	0.20	-0.9
4,924,365	-		PP_4334	0.20	-0.4
4,924,365	-		PP_4334	0.20	-1.6
4,924,429	+		PP_4334	0.27	+1.7
4,924,430	-		PP_4334	0.27	-0.5
4,924,610	+		PP_4334	0.49	+1.9
4,924,610	+		PP_4334	0.49	+1.4
4,924,610	+		PP_4334	0.49	+4.4
4,924,652	-		PP_4334	0.53	+0.2
4,924,805	+		PP_4334	0.71	+0.5
4,924,805	+		PP_4334	0.71	+1.9
4,924,806	-		PP_4334	0.71	-0.7
4,924,806	-		PP_4334	0.71	+0.8
4,924,844	+		PP_4334	0.76	+2.7
4,924,844	+		PP_4334	0.76	+1.8
4,924,845	-		PP_4334	0.76	-2.0
4,924,929	+		PP_4334	0.86	+2.5
4,924,929	+		PP_4334	0.86	+1.6
4,924,929	+		PP_4334	0.86	+1.5
4,924,929	+		PP_4334	0.86	+1.9
4,924,929	+		PP_4334	0.86	+1.6
4,924,995	+				+1.4
4,924,995	+				+2.2
4,924,995	+				+0.8
4,924,995	+				+1.5
4,924,995	+				+2.0
4,924,996	-				-0.5
4,924,996	-				+0.6
4,924,996	-				+0.0
4,924,999	+				+1.4
4,924,999	+				+1.8
4,924,999	+				+2.5
4,924,999	+				+2.2
4,925,000	-				-0.8
4,925,000	-				+0.4
4,925,000	-				+0.3
4,925,056	+				+0.9
4,925,056	+				+1.7
4,925,056	+				+0.8
4,925,056	+				+1.1
4,925,056	+				+2.2
4,925,056	+				+2.1
4,925,057	-				+0.4
4,925,057	-				-0.1
4,925,069	-				-0.8
4,925,098	+				+1.8
4,925,098	+				-0.8
4,925,166	+				+2.1
4,925,192	+				+1.4
4,925,192	+				+2.4
4,925,467	+		PP_4335	0.35	-0.2
4,925,467	+		PP_4335	0.35	+0.4
4,925,472	+		PP_4335	0.35	+0.7
4,925,472	+		PP_4335	0.35	+0.1
4,925,473	-		PP_4335	0.36	-3.1
4,925,473	-		PP_4335	0.36	-0.5
4,925,473	-		PP_4335	0.36	+1.6
4,925,861	+		PP_4335	0.81	-0.6
4,925,884	+		PP_4335	0.83	+0.2
4,925,892	+		PP_4335	0.84	-0.5
4,925,892	+		PP_4335	0.84	-1.1
4,925,892	+		PP_4335	0.84	+0.3
4,925,892	+		PP_4335	0.84	+0.1
4,925,893	-		PP_4335	0.84	+0.7
4,925,893	-		PP_4335	0.84	-1.0
4,925,893	-		PP_4335	0.84	-0.9
4,925,896	+		PP_4335	0.85	-0.4
4,925,897	-		PP_4335	0.85	+1.4
4,925,897	-		PP_4335	0.85	+0.0
4,925,897	-		PP_4335	0.85	+0.3
4,925,922	+		PP_4335	0.88	+0.3
4,925,922	+		PP_4335	0.88	-0.3
4,925,922	+		PP_4335	0.88	-0.3
4,925,923	-		PP_4335	0.88	+0.3
4,925,967	+				+0.6
4,925,967	+				+0.0