Strain Fitness in Pseudomonas putida KT2440 around PP_4179

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
4,720,765	+				-0.4
4,720,899	+				+1.4
4,720,940	+				+0.3
4,720,959	+		PP_4178	0.12	+0.4
4,720,960	-		PP_4178	0.12	-1.1
4,721,396	+		PP_4178	0.72	+0.6
4,721,396	+		PP_4178	0.72	+0.6
4,721,396	+		PP_4178	0.72	-0.1
4,721,397	-		PP_4178	0.73	+0.5
4,721,420	+		PP_4178	0.76	+0.4
4,721,525	+				-0.2
4,721,525	+				-0.1
4,721,526	-				-2.3
4,721,543	+				-0.4
4,721,543	+				-0.2
4,721,543	+				-0.9
4,721,584	+				+0.2
4,721,680	+				+1.1
4,721,681	-				+1.2
4,721,681	-				+1.2
4,721,703	-				+0.8
4,721,703	-				-2.3
4,722,134	+		PP_4179	0.25	+0.1
4,722,251	+		PP_4179	0.31	-0.5
4,722,251	+		PP_4179	0.31	+0.4
4,722,251	+		PP_4179	0.31	-0.1
4,722,252	-		PP_4179	0.31	+0.9
4,722,254	+		PP_4179	0.31	+0.6
4,722,254	+		PP_4179	0.31	+1.0
4,722,254	+		PP_4179	0.31	-1.4
4,722,255	-		PP_4179	0.31	+2.1
4,722,255	-		PP_4179	0.31	-0.4
4,722,255	-		PP_4179	0.31	+0.2
4,722,255	-		PP_4179	0.31	+2.1
4,722,255	-		PP_4179	0.31	-1.4
4,722,255	-		PP_4179	0.31	+0.5
4,722,255	-		PP_4179	0.31	-0.5
4,722,290	+		PP_4179	0.33	+0.4
4,722,290	+		PP_4179	0.33	+1.4
4,722,597	-		PP_4179	0.49	+0.2
4,722,648	-		PP_4179	0.52	+1.8
4,722,648	-		PP_4179	0.52	-0.1
4,722,648	-		PP_4179	0.52	+0.6
4,722,680	+		PP_4179	0.54	+0.8
4,722,710	+		PP_4179	0.55	+1.1
4,722,710	+		PP_4179	0.55	+1.8
4,722,710	+		PP_4179	0.55	-0.8
4,722,710	+		PP_4179	0.55	+0.7
4,722,710	+		PP_4179	0.55	+0.6
4,722,710	+		PP_4179	0.55	+1.3
4,722,711	-		PP_4179	0.55	+1.5
4,722,711	-		PP_4179	0.55	-0.5
4,722,725	+		PP_4179	0.56	+1.5
4,722,725	+		PP_4179	0.56	-0.3
4,722,725	+		PP_4179	0.56	+1.3
4,722,726	-		PP_4179	0.56	-0.8
4,722,726	-		PP_4179	0.56	+0.6
4,722,797	+				+1.6
4,722,797	+		PP_4179	0.60	+1.5
4,722,798	-		PP_4179	0.60	+1.0
4,722,798	-		PP_4179	0.60	+0.3
4,722,798	-		PP_4179	0.60	+0.8
4,722,810	-		PP_4179	0.60	+0.7
4,723,137	-		PP_4179	0.78	+0.5
4,723,137	-		PP_4179	0.78	+1.3
4,723,173	-		PP_4179	0.79	+0.9
4,723,793	+		PP_4180	0.33	+1.6
4,723,797	+				+0.2
4,723,798	-		PP_4180	0.34	+0.1
4,723,824	-		PP_4180	0.40	+1.0
4,723,872	-		PP_4180	0.49	-0.1
4,723,872	-		PP_4180	0.49	-2.6
4,723,884	-		PP_4180	0.52	-1.5
4,724,269	+		PP_4181	0.33	+1.0
4,724,269	+		PP_4181	0.33	-2.6
4,724,269	+		PP_4181	0.33	+0.3
4,724,270	-		PP_4181	0.33	+1.0
4,724,287	+		PP_4181	0.37	-0.0
4,724,287	+		PP_4181	0.37	+0.8
4,724,287	+		PP_4181	0.37	+0.2
4,724,287	+		PP_4181	0.37	+0.7
4,724,288	-		PP_4181	0.37	+1.1
4,724,288	-		PP_4181	0.37	-0.6
4,724,288	-				+0.2
4,724,288	-		PP_4181	0.37	-0.0
4,724,288	-		PP_4181	0.37	-0.3
4,724,288	-		PP_4181	0.37	+0.0
4,724,320	+		PP_4181	0.44	-0.1
4,724,320	+		PP_4181	0.44	+0.1
4,724,321	-		PP_4181	0.44	+1.7
4,724,321	-		PP_4181	0.44	+0.0