Strain Fitness in Pseudomonas putida KT2440 around PP_4106

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
4,639,491	+		PP_4104	0.59	+0.9
4,639,707	+		PP_4104	0.90	+0.1
4,639,812	+				+0.1
4,639,812	+				+0.1
4,639,943	+		PP_4105	0.16	+1.4
4,639,943	+		PP_4105	0.16	+1.5
4,639,943	+		PP_4105	0.16	+2.0
4,639,944	-		PP_4105	0.16	+0.1
4,639,944	-		PP_4105	0.16	-0.7
4,639,944	-		PP_4105	0.16	+0.2
4,640,038	+		PP_4105	0.35	+0.2
4,640,117	-		PP_4105	0.51	+0.4
4,640,128	-				+0.2
4,640,184	+		PP_4105	0.64	+0.7
4,640,185	-		PP_4105	0.64	+0.5
4,640,307	+		PP_4105	0.89	-1.7
4,640,307	+		PP_4105	0.89	-0.1
4,640,307	+		PP_4105	0.89	-1.1
4,640,307	+		PP_4105	0.89	+0.7
4,640,308	-		PP_4105	0.89	-0.3
4,640,308	-		PP_4105	0.89	-1.4
4,640,308	-		PP_4105	0.89	+0.4
4,640,315	-				-0.4
4,640,362	+				-0.4
4,640,362	+				+0.4
4,640,362	+				-0.3
4,640,407	+				-0.3
4,640,518	-				+1.3
4,640,538	+				-1.5
4,640,538	+				+0.3
4,640,538	+				-0.2
4,640,538	+				+0.9
4,640,538	+				+0.7
4,640,539	-				+0.5
4,640,539	-				+1.0
4,640,539	-				+0.2
4,640,564	+		PP_4106	0.10	+0.4
4,640,565	-		PP_4106	0.10	-0.6
4,640,673	+		PP_4106	0.18	+0.7
4,640,673	+		PP_4106	0.18	+0.8
4,640,674	-		PP_4106	0.18	-0.8
4,640,739	+		PP_4106	0.23	+0.5
4,640,739	+		PP_4106	0.23	-0.3
4,640,739	+		PP_4106	0.23	-0.1
4,640,739	+		PP_4106	0.23	-0.7
4,640,739	+		PP_4106	0.23	+0.2
4,640,740	-		PP_4106	0.23	+0.4
4,640,740	-		PP_4106	0.23	-0.3
4,640,740	-		PP_4106	0.23	-0.2
4,640,740	-				+1.8
4,640,740	-		PP_4106	0.23	-0.2
4,640,860	-		PP_4106	0.32	+0.2
4,640,970	-		PP_4106	0.40	+0.3
4,640,987	+		PP_4106	0.41	+0.2
4,641,051	+		PP_4106	0.46	-1.5
4,641,051	+		PP_4106	0.46	+0.8
4,641,069	+		PP_4106	0.47	-1.2
4,641,070	-		PP_4106	0.47	+0.2
4,641,438	+		PP_4106	0.74	+1.1
4,641,438	+		PP_4106	0.74	+0.1
4,641,438	+		PP_4106	0.74	+0.8
4,641,438	+		PP_4106	0.74	-0.3
4,641,439	-		PP_4106	0.74	-0.1
4,641,439	-		PP_4106	0.74	+0.3
4,641,504	+		PP_4106	0.78	+0.1
4,641,504	+		PP_4106	0.78	+0.8
4,641,504	+		PP_4106	0.78	+0.1
4,641,505	-		PP_4106	0.78	-0.5
4,641,521	-		PP_4106	0.80	-0.4
4,641,556	-		PP_4106	0.82	-0.8
4,641,556	-		PP_4106	0.82	-1.4
4,641,940	+				+1.4
4,641,941	-				+0.4
4,641,960	+				+0.3
4,641,960	+				-0.3
4,641,961	-				+1.4
4,641,968	+				-0.4
4,641,968	+				-0.9
4,641,968	+				-0.3
4,641,969	-				-0.0
4,642,006	+				+0.2
4,642,006	+				+0.3
4,642,046	+				+1.0
4,642,265	+		PP_4107	0.23	-0.1
4,642,305	+		PP_4107	0.28	-0.6
4,642,305	+		PP_4107	0.28	-0.4
4,642,305	+		PP_4107	0.28	+0.2
4,642,306	-		PP_4107	0.28	+0.3
4,642,316	+		PP_4107	0.29	+2.5
4,642,316	+		PP_4107	0.29	+0.7
4,642,316	+		PP_4107	0.29	+0.7
4,642,317	-		PP_4107	0.29	-0.2
4,642,317	-		PP_4107	0.29	-1.3
4,642,328	+		PP_4107	0.30	-0.8
4,642,329	-		PP_4107	0.30	-1.0
4,642,707	-		PP_4107	0.72	+2.1
4,642,707	-		PP_4107	0.72	+0.2
4,642,707	-		PP_4107	0.72	-0.7
4,642,707	-		PP_4107	0.72	+0.2
4,642,733	+		PP_4107	0.75	+1.1
4,642,734	-		PP_4107	0.75	-1.8
4,642,734	-		PP_4107	0.75	-0.8
4,642,734	-		PP_4107	0.75	-0.6
4,642,741	+		PP_4107	0.76	-0.4
4,642,742	-		PP_4107	0.76	+0.8
4,642,788	-		PP_4107	0.81	-0.4