Strain Fitness in Pseudomonas putida KT2440 around PP_3930

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
4,433,534	+				+0.5
4,433,574	+				+0.6
4,433,574	+				+0.0
4,433,575	-				+0.9
4,433,575	-				+1.7
4,433,575	-				-1.9
4,433,575	-				+2.5
4,433,703	+		PP_3928	0.48	+1.2
4,433,796	+		PP_3928	0.80	+0.8
4,433,796	+		PP_3928	0.80	+0.1
4,433,796	+		PP_3928	0.80	-0.7
4,433,796	+		PP_3928	0.80	+0.7
4,433,796	+		PP_3928	0.80	+0.3
4,433,797	-		PP_3928	0.81	+0.1
4,433,797	-		PP_3928	0.81	-0.1
4,433,797	-		PP_3928	0.81	+0.6
4,433,797	-		PP_3928	0.81	+0.1
4,433,797	-		PP_3928	0.81	+0.1
4,433,797	-		PP_3928	0.81	-0.2
4,433,797	-		PP_3928	0.81	-1.4
4,433,797	-		PP_3928	0.81	+0.4
4,433,928	-				-0.9
4,433,928	-				-0.5
4,433,928	-				+0.3
4,434,054	-		PP_3929	0.15	+0.5
4,434,073	+		PP_3929	0.22	+0.1
4,434,090	+		PP_3929	0.28	+0.8
4,434,091	-		PP_3929	0.28	+0.4
4,434,091	-		PP_3929	0.28	+1.3
4,434,092	+		PP_3929	0.29	+0.0
4,434,093	-		PP_3929	0.29	+0.3
4,434,169	-		PP_3929	0.58	+0.4
4,434,270	+				-0.7
4,434,270	+				-0.0
4,434,270	+				-0.1
4,434,271	-				-0.5
4,434,273	+				+0.1
4,434,273	+				+0.4
4,434,273	+				-0.5
4,434,273	+				+0.0
4,434,274	-				+0.9
4,434,274	-				+1.6
4,434,351	+				+0.6
4,434,395	+		PP_3930	0.10	-1.4
4,434,395	+		PP_3930	0.10	-0.5
4,434,396	-		PP_3930	0.10	-0.4
4,434,396	-				+1.6
4,434,626	+		PP_3930	0.69	-1.0
4,434,810	+				+0.1
4,434,832	+				+0.6
4,435,141	-		PP_3931	0.15	+1.1
4,435,160	+		PP_3931	0.16	+0.7
4,435,161	-		PP_3931	0.16	+1.0
4,435,335	+		PP_3931	0.25	-1.0
4,435,336	-		PP_3931	0.25	+0.7
4,435,336	-		PP_3931	0.25	-1.0
4,435,433	+		PP_3931	0.31	+1.1
4,435,447	+		PP_3931	0.31	+0.2
4,435,448	-		PP_3931	0.31	+0.0
4,435,448	-		PP_3931	0.31	-0.9
4,435,448	-		PP_3931	0.31	-0.4
4,435,532	+		PP_3931	0.36	+0.4
4,435,541	-		PP_3931	0.36	+0.9
4,435,541	-		PP_3931	0.36	-0.2