Strain Fitness in Pseudomonas putida KT2440 around PP_3876

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
4,396,312	+				-2.0
4,396,313	-				-0.7
4,396,318	+				-1.0
4,396,318	+				-0.4
4,396,520	-		PP_3874	0.56	+0.7
4,396,520	-		PP_3874	0.56	-0.8
4,396,628	+		PP_3874	0.85	+0.1
4,396,629	-		PP_3874	0.85	-0.2
4,396,667	+				+0.7
4,396,667	+				+0.9
4,396,667	+				+0.4
4,396,668	-				+0.3
4,396,668	-				+0.8
4,396,671	+				-0.9
4,396,671	+				+0.2
4,396,671	+				-0.1
4,396,672	-				+0.2
4,396,672	-				+0.3
4,396,679	+				-0.2
4,396,863	+		PP_3875	0.32	+1.5
4,396,874	+		PP_3875	0.34	+0.3
4,396,875	-		PP_3875	0.34	-0.2
4,396,911	+		PP_3875	0.40	+0.4
4,396,921	+		PP_3875	0.42	+0.1
4,396,921	+		PP_3875	0.42	-0.5
4,396,922	-		PP_3875	0.42	-0.7
4,397,221	-				+0.0
4,397,221	-				+0.1
4,397,384	+		PP_3876	0.43	-0.7
4,397,472	+		PP_3876	0.70	+1.3
4,397,473	-		PP_3876	0.71	+1.0
4,397,545	-				-1.2
4,397,554	+				-0.6
4,397,809	+		PP_3877	0.20	-0.0
4,397,834	+		PP_3877	0.22	+0.2
4,397,835	-		PP_3877	0.22	+0.3
4,397,835	-		PP_3877	0.22	-0.2
4,397,860	-		PP_3877	0.24	+0.5
4,398,155	+		PP_3877	0.47	+1.0
4,398,155	+		PP_3877	0.47	-0.1
4,398,155	+		PP_3877	0.47	+0.5
4,398,155	+		PP_3877	0.47	-0.2
4,398,156	-		PP_3877	0.47	-1.1
4,398,156	-		PP_3877	0.47	+0.1
4,398,289	-		PP_3877	0.57	-1.9
4,398,289	-		PP_3877	0.57	-0.4
4,398,486	+		PP_3877	0.72	+0.4
4,398,487	-		PP_3877	0.72	+0.1