Strain Fitness in Pseudomonas putida KT2440 around PP_3783

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
4,309,289	-		PP_3781	0.49	+0.7
4,309,289	-		PP_3781	0.49	+0.5
4,309,373	-		PP_3781	0.55	-0.1
4,309,385	+		PP_3781	0.56	-0.2
4,309,405	+		PP_3781	0.57	-0.3
4,309,447	+		PP_3781	0.60	+1.2
4,309,465	+		PP_3781	0.61	-0.6
4,309,466	-		PP_3781	0.62	+0.2
4,309,530	+		PP_3781	0.66	+0.2
4,309,530	+		PP_3781	0.66	+1.3
4,309,531	-		PP_3781	0.66	+0.1
4,309,587	+		PP_3781	0.70	+0.1
4,309,587	+		PP_3781	0.70	-0.1
4,309,587	+		PP_3781	0.70	-0.5
4,309,601	-		PP_3781	0.71	+1.1
4,309,765	+		PP_3781	0.83	+0.8
4,309,765	+		PP_3781	0.83	-0.0
4,309,766	-		PP_3781	0.83	+0.1
4,309,766	-		PP_3781	0.83	-0.8
4,309,766	-		PP_3781	0.83	-0.0
4,309,766	-		PP_3781	0.83	+0.1
4,309,821	-		PP_3781	0.87	+0.8
4,309,978	-				-0.2
4,309,987	-				+1.1
4,310,065	+		PP_3782	0.12	-0.5
4,310,065	+		PP_3782	0.12	+1.5
4,310,066	-		PP_3782	0.12	+0.6
4,310,066	-		PP_3782	0.12	+0.1
4,310,068	+		PP_3782	0.13	-0.6
4,310,069	-		PP_3782	0.13	+0.3
4,310,069	-		PP_3782	0.13	-0.2
4,310,093	-		PP_3782	0.23	-0.2
4,310,143	+		PP_3782	0.44	-0.7
4,310,168	+		PP_3782	0.55	+0.2
4,310,168	+		PP_3782	0.55	-0.4
4,310,169	-		PP_3782	0.55	+0.7
4,310,169	-		PP_3782	0.55	-0.0
4,310,287	+				-0.5
4,310,352	+				-1.6
4,310,352	+				+0.4
4,310,353	-				+0.1
4,310,353	-				-0.3
4,310,353	-				+0.4
4,310,356	+				+1.2
4,310,356	+				-0.1
4,310,356	+				-0.8
4,310,357	-				-0.7
4,310,373	+				+0.3
4,310,374	-				-1.0
4,310,374	-				+1.4
4,310,484	+		PP_3783	0.21	-0.3
4,310,484	+		PP_3783	0.21	+0.3
4,310,743	+		PP_3783	0.49	+0.3
4,310,743	+		PP_3783	0.49	-0.6
4,310,799	+		PP_3783	0.54	-2.6
4,310,799	+		PP_3783	0.54	-1.1
4,310,800	-		PP_3783	0.55	+0.4
4,310,874	+		PP_3783	0.62	+0.4
4,310,874	+		PP_3783	0.62	-0.4
4,310,874	+		PP_3783	0.62	+0.1
4,310,874	+		PP_3783	0.62	-1.1
4,310,875	-		PP_3783	0.63	-0.9
4,310,875	-		PP_3783	0.63	-0.9
4,310,875	-		PP_3783	0.63	-0.1
4,310,875	-		PP_3783	0.63	-1.3
4,310,875	-		PP_3783	0.63	-3.2
4,310,875	-		PP_3783	0.63	-0.3
4,310,875	-		PP_3783	0.63	-1.4
4,310,881	-		PP_3783	0.63	-0.5
4,310,903	-		PP_3783	0.66	-1.1
4,310,940	+		PP_3783	0.70	-0.3
4,310,940	+		PP_3783	0.70	-0.5
4,310,941	-		PP_3783	0.70	-0.0
4,310,941	-		PP_3783	0.70	+0.4
4,310,941	-		PP_3783	0.70	+0.1
4,310,941	-		PP_3783	0.70	-0.8
4,311,039	+		PP_3783	0.80	-1.0
4,311,039	+		PP_3783	0.80	-0.2
4,311,052	-		PP_3783	0.82	-0.3
4,311,052	-		PP_3783	0.82	+0.8
4,311,129	+		PP_3783	0.90	-1.1
4,311,129	+		PP_3783	0.90	-1.0
4,311,130	-		PP_3783	0.90	+1.2
4,311,130	-		PP_3783	0.90	-0.5
4,311,364	+				+0.5
4,311,537	+		PP_3784	0.22	+0.1
4,311,538	-		PP_3784	0.22	+1.1
4,311,589	-		PP_3784	0.27	+1.3
4,311,589	-		PP_3784	0.27	-0.7
4,311,642	+		PP_3784	0.31	+1.0
4,311,642	+		PP_3784	0.31	+0.7
4,311,642	+		PP_3784	0.31	+0.3
4,311,643	-				+0.5
4,311,719	+		PP_3784	0.38	+1.1
4,311,785	+		PP_3784	0.44	+0.4
4,311,785	+		PP_3784	0.44	-0.6
4,311,785	+		PP_3784	0.44	-0.7
4,311,786	-		PP_3784	0.44	-0.4
4,311,786	-		PP_3784	0.44	-0.0
4,311,786	-		PP_3784	0.44	+0.3
4,311,786	-		PP_3784	0.44	-0.7
4,311,827	+		PP_3784	0.47	+0.5
4,311,922	-		PP_3784	0.56	-0.4
4,311,925	+		PP_3784	0.56	-0.0
4,311,925	+		PP_3784	0.56	+0.1
4,311,925	+		PP_3784	0.56	-0.2
4,311,926	-		PP_3784	0.56	-0.9
4,311,926	-		PP_3784	0.56	-0.4
4,312,034	-		PP_3784	0.65	-0.1
4,312,126	+		PP_3784	0.73	+1.2
4,312,127	-		PP_3784	0.73	+0.4
4,312,195	-		PP_3784	0.79	+0.5