Strain Fitness in Pseudomonas putida KT2440 around PP_3741

Experiment: 1-Pentanol 0.3 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3740 and PP_3741 are separated by 560 nucleotidesPP_3741 and PP_3742 are separated by 42 nucleotidesPP_3742 and PP_3743 are separated by 281 nucleotides PP_3740: PP_3740 - Major facilitator family transporter, at 4,267,960 to 4,269,300 _3740 PP_3741: PP_3741 - transpeptidase (penicillin-binding protein 2), at 4,269,861 to 4,271,756 _3741 PP_3742: PP_3742 - Glutathione S-transferase family protein, at 4,271,799 to 4,272,425 _3742 PP_3743: PP_3743 - conserved exported protein of unknown function, at 4,272,707 to 4,273,024 _3743 Position (kb) 4269 4270 4271 4272Strain fitness (log2 ratio) -2 -1 0 1at 4268.894 kb on + strand, within PP_3740at 4268.895 kb on - strand, within PP_3740at 4268.895 kb on - strand, within PP_3740at 4269.231 kb on + strandat 4269.231 kb on + strandat 4269.232 kb on - strandat 4269.232 kb on - strandat 4269.232 kb on - strandat 4269.295 kb on - strandat 4269.424 kb on + strandat 4269.520 kb on - strandat 4269.524 kb on - strandat 4269.714 kb on + strandat 4269.714 kb on + strandat 4269.833 kb on - strandat 4269.978 kb on + strandat 4269.978 kb on + strandat 4269.979 kb on - strandat 4269.979 kb on - strandat 4269.979 kb on - strandat 4269.982 kb on + strandat 4269.982 kb on + strandat 4269.983 kb on - strandat 4270.094 kb on - strand, within PP_3741at 4270.211 kb on + strand, within PP_3741at 4270.211 kb on + strand, within PP_3741at 4270.212 kb on - strand, within PP_3741at 4270.212 kb on - strand, within PP_3741at 4270.268 kb on + strand, within PP_3741at 4270.269 kb on - strand, within PP_3741at 4270.269 kb on - strand, within PP_3741at 4270.399 kb on - strand, within PP_3741at 4270.399 kb on - strand, within PP_3741at 4270.399 kb on - strand, within PP_3741at 4270.495 kb on - strand, within PP_3741at 4270.495 kb on - strand, within PP_3741at 4270.601 kb on + strand, within PP_3741at 4270.601 kb on + strand, within PP_3741at 4270.602 kb on - strand, within PP_3741at 4270.602 kb on - strand, within PP_3741at 4270.603 kb on + strand, within PP_3741at 4270.603 kb on + strand, within PP_3741at 4270.603 kb on + strand, within PP_3741at 4270.603 kb on + strand, within PP_3741at 4270.603 kb on + strand, within PP_3741at 4270.604 kb on - strand, within PP_3741at 4270.604 kb on - strand, within PP_3741at 4270.604 kb on - strand, within PP_3741at 4270.604 kb on - strand, within PP_3741at 4270.604 kb on - strand, within PP_3741at 4270.633 kb on + strand, within PP_3741at 4270.678 kb on + strand, within PP_3741at 4270.678 kb on + strand, within PP_3741at 4270.678 kb on + strand, within PP_3741at 4270.679 kb on - strand, within PP_3741at 4270.679 kb on - strand, within PP_3741at 4270.702 kb on + strand, within PP_3741at 4270.770 kb on + strandat 4270.770 kb on + strand, within PP_3741at 4270.770 kb on + strand, within PP_3741at 4270.771 kb on - strand, within PP_3741at 4270.830 kb on + strand, within PP_3741at 4270.830 kb on + strand, within PP_3741at 4270.830 kb on + strand, within PP_3741at 4270.924 kb on - strand, within PP_3741at 4270.926 kb on + strand, within PP_3741at 4270.927 kb on - strand, within PP_3741at 4270.941 kb on + strand, within PP_3741at 4270.953 kb on + strand, within PP_3741at 4270.953 kb on + strand, within PP_3741at 4270.953 kb on + strand, within PP_3741at 4270.954 kb on - strand, within PP_3741at 4270.995 kb on + strand, within PP_3741at 4270.995 kb on + strand, within PP_3741at 4270.995 kb on + strand, within PP_3741at 4270.995 kb on + strand, within PP_3741at 4270.995 kb on + strandat 4270.995 kb on + strand, within PP_3741at 4270.995 kb on + strand, within PP_3741at 4270.996 kb on - strand, within PP_3741at 4270.996 kb on - strand, within PP_3741at 4270.996 kb on - strand, within PP_3741at 4271.025 kb on + strand, within PP_3741at 4271.026 kb on - strand, within PP_3741at 4271.026 kb on - strand, within PP_3741at 4271.032 kb on - strand, within PP_3741at 4271.073 kb on + strand, within PP_3741at 4271.073 kb on + strand, within PP_3741at 4271.223 kb on + strand, within PP_3741at 4271.223 kb on + strand, within PP_3741at 4271.224 kb on - strand, within PP_3741at 4271.224 kb on - strand, within PP_3741at 4271.224 kb on - strand, within PP_3741at 4271.224 kb on - strand, within PP_3741at 4271.225 kb on + strand, within PP_3741at 4271.325 kb on - strand, within PP_3741at 4271.520 kb on + strand, within PP_3741at 4271.520 kb on + strand, within PP_3741at 4271.520 kb on + strand, within PP_3741at 4271.521 kb on - strand, within PP_3741at 4271.612 kb on - strandat 4271.679 kb on + strandat 4271.679 kb on + strandat 4271.679 kb on + strandat 4271.679 kb on + strandat 4271.679 kb on + strandat 4271.680 kb on - strandat 4271.680 kb on - strandat 4271.827 kb on + strandat 4271.828 kb on - strandat 4271.930 kb on - strand, within PP_3742at 4272.009 kb on - strand, within PP_3742at 4272.009 kb on - strand, within PP_3742at 4272.014 kb on - strand, within PP_3742at 4272.100 kb on + strand, within PP_3742at 4272.101 kb on - strand, within PP_3742at 4272.103 kb on + strand, within PP_3742at 4272.103 kb on + strand, within PP_3742at 4272.104 kb on - strand, within PP_3742at 4272.104 kb on - strand, within PP_3742at 4272.104 kb on - strand, within PP_3742at 4272.104 kb on - strand, within PP_3742at 4272.116 kb on + strand, within PP_3742at 4272.116 kb on + strand, within PP_3742at 4272.380 kb on - strandat 4272.380 kb on - strandat 4272.380 kb on - strandat 4272.633 kb on + strandat 4272.633 kb on + strandat 4272.655 kb on + strandat 4272.656 kb on - strandat 4272.672 kb on - strandat 4272.672 kb on - strandat 4272.692 kb on - strandat 4272.717 kb on + strandat 4272.718 kb on - strandat 4272.718 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol%
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4,268,894 + PP_3740 0.70 -1.1
4,268,895 - PP_3740 0.70 +0.2
4,268,895 - PP_3740 0.70 -0.1
4,269,231 + -0.0
4,269,231 + +0.7
4,269,232 - +0.1
4,269,232 - -0.3
4,269,232 - +0.4
4,269,295 - -1.1
4,269,424 + -0.3
4,269,520 - -0.3
4,269,524 - +0.1
4,269,714 + +0.3
4,269,714 + +0.1
4,269,833 - +1.4
4,269,978 + -0.5
4,269,978 + +0.6
4,269,979 - +0.5
4,269,979 - -1.4
4,269,979 - -1.1
4,269,982 + +0.5
4,269,982 + -0.1
4,269,983 - -0.0
4,270,094 - PP_3741 0.12 -0.2
4,270,211 + PP_3741 0.18 -1.3
4,270,211 + PP_3741 0.18 +0.6
4,270,212 - PP_3741 0.19 -0.6
4,270,212 - PP_3741 0.19 -0.3
4,270,268 + PP_3741 0.21 +0.1
4,270,269 - PP_3741 0.22 -1.5
4,270,269 - PP_3741 0.22 -0.2
4,270,399 - PP_3741 0.28 -1.6
4,270,399 - PP_3741 0.28 -0.5
4,270,399 - PP_3741 0.28 -0.1
4,270,495 - PP_3741 0.33 +1.2
4,270,495 - PP_3741 0.33 +0.3
4,270,601 + PP_3741 0.39 -0.1
4,270,601 + PP_3741 0.39 -1.0
4,270,602 - PP_3741 0.39 -0.8
4,270,602 - PP_3741 0.39 +1.1
4,270,603 + PP_3741 0.39 +0.6
4,270,603 + PP_3741 0.39 -1.0
4,270,603 + PP_3741 0.39 +0.1
4,270,603 + PP_3741 0.39 +0.4
4,270,603 + PP_3741 0.39 -0.5
4,270,604 - PP_3741 0.39 +0.4
4,270,604 - PP_3741 0.39 +0.3
4,270,604 - PP_3741 0.39 -0.0
4,270,604 - PP_3741 0.39 +0.1
4,270,604 - PP_3741 0.39 +0.7
4,270,633 + PP_3741 0.41 -0.6
4,270,678 + PP_3741 0.43 -1.4
4,270,678 + PP_3741 0.43 +0.1
4,270,678 + PP_3741 0.43 +0.1
4,270,679 - PP_3741 0.43 -0.1
4,270,679 - PP_3741 0.43 -0.3
4,270,702 + PP_3741 0.44 -0.1
4,270,770 + +1.1
4,270,770 + PP_3741 0.48 +1.1
4,270,770 + PP_3741 0.48 -0.4
4,270,771 - PP_3741 0.48 -1.2
4,270,830 + PP_3741 0.51 +0.1
4,270,830 + PP_3741 0.51 +1.1
4,270,830 + PP_3741 0.51 +0.1
4,270,924 - PP_3741 0.56 -0.0
4,270,926 + PP_3741 0.56 -1.1
4,270,927 - PP_3741 0.56 -1.3
4,270,941 + PP_3741 0.57 -1.3
4,270,953 + PP_3741 0.58 -0.8
4,270,953 + PP_3741 0.58 +0.0
4,270,953 + PP_3741 0.58 -0.4
4,270,954 - PP_3741 0.58 -0.2
4,270,995 + PP_3741 0.60 -1.9
4,270,995 + PP_3741 0.60 +1.3
4,270,995 + PP_3741 0.60 -0.4
4,270,995 + PP_3741 0.60 +0.1
4,270,995 + -0.5
4,270,995 + PP_3741 0.60 +0.4
4,270,995 + PP_3741 0.60 -0.1
4,270,996 - PP_3741 0.60 -1.2
4,270,996 - PP_3741 0.60 +0.1
4,270,996 - PP_3741 0.60 -0.5
4,271,025 + PP_3741 0.61 +0.5
4,271,026 - PP_3741 0.61 +0.9
4,271,026 - PP_3741 0.61 -0.2
4,271,032 - PP_3741 0.62 -0.6
4,271,073 + PP_3741 0.64 -0.6
4,271,073 + PP_3741 0.64 +0.9
4,271,223 + PP_3741 0.72 -0.3
4,271,223 + PP_3741 0.72 +0.1
4,271,224 - PP_3741 0.72 +1.1
4,271,224 - PP_3741 0.72 +0.4
4,271,224 - PP_3741 0.72 -1.2
4,271,224 - PP_3741 0.72 +1.1
4,271,225 + PP_3741 0.72 -0.1
4,271,325 - PP_3741 0.77 -0.7
4,271,520 + PP_3741 0.88 +1.1
4,271,520 + PP_3741 0.88 +0.6
4,271,520 + PP_3741 0.88 +1.6
4,271,521 - PP_3741 0.88 -0.1
4,271,612 - -0.2
4,271,679 + -0.5
4,271,679 + +0.1
4,271,679 + +0.9
4,271,679 + +0.2
4,271,679 + -1.9
4,271,680 - +0.6
4,271,680 - +0.8
4,271,827 + -1.2
4,271,828 - +0.5
4,271,930 - PP_3742 0.21 +0.2
4,272,009 - PP_3742 0.33 -0.4
4,272,009 - PP_3742 0.33 +0.3
4,272,014 - PP_3742 0.34 +0.2
4,272,100 + PP_3742 0.48 -0.0
4,272,101 - PP_3742 0.48 -0.3
4,272,103 + PP_3742 0.48 -0.2
4,272,103 + PP_3742 0.48 +0.3
4,272,104 - PP_3742 0.49 +1.0
4,272,104 - PP_3742 0.49 -0.3
4,272,104 - PP_3742 0.49 -0.3
4,272,104 - PP_3742 0.49 -0.5
4,272,116 + PP_3742 0.51 -0.0
4,272,116 + PP_3742 0.51 -0.4
4,272,380 - -0.3
4,272,380 - -0.9
4,272,380 - -1.4
4,272,633 + -1.4
4,272,633 + -0.6
4,272,655 + -0.6
4,272,656 - +0.0
4,272,672 - -0.6
4,272,672 - +1.0
4,272,692 - +0.9
4,272,717 + -0.6
4,272,718 - -1.0
4,272,718 - -0.3

Or see this region's nucleotide sequence