Strain Fitness in Pseudomonas putida KT2440 around PP_3682

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
4,185,115	+		PP_3681	0.54	+0.9
4,185,115	+		PP_3681	0.54	+0.1
4,185,115	+		PP_3681	0.54	-1.2
4,185,116	-		PP_3681	0.54	-1.4
4,185,116	-		PP_3681	0.54	-0.5
4,185,116	-		PP_3681	0.54	-0.6
4,185,116	-		PP_3681	0.54	-0.3
4,185,141	+		PP_3681	0.55	+0.6
4,185,142	-		PP_3681	0.55	+0.4
4,185,249	+		PP_3681	0.62	+1.6
4,185,250	-		PP_3681	0.62	-1.0
4,185,318	+				+1.0
4,185,366	+		PP_3681	0.69	+0.0
4,185,367	-		PP_3681	0.69	-0.1
4,185,418	-		PP_3681	0.72	+0.7
4,185,460	+		PP_3681	0.75	+0.4
4,185,460	+		PP_3681	0.75	-0.3
4,185,460	+		PP_3681	0.75	-0.7
4,185,460	+		PP_3681	0.75	+1.0
4,185,460	+		PP_3681	0.75	-2.4
4,185,461	-		PP_3681	0.75	+0.1
4,185,461	-		PP_3681	0.75	+0.6
4,185,461	-		PP_3681	0.75	+0.4
4,185,461	-		PP_3681	0.75	+0.3
4,185,461	-		PP_3681	0.75	-0.4
4,185,461	-		PP_3681	0.75	+0.2
4,185,465	+		PP_3681	0.75	-0.7
4,185,495	+		PP_3681	0.77	-1.1
4,185,495	+		PP_3681	0.77	-0.7
4,185,496	-		PP_3681	0.77	-0.9
4,185,508	+		PP_3681	0.77	+0.4
4,185,508	+		PP_3681	0.77	+0.3
4,185,509	-		PP_3681	0.78	-0.6
4,185,509	-		PP_3681	0.78	+0.4
4,185,509	-		PP_3681	0.78	-0.9
4,185,727	-				+1.9
4,185,780	+				+0.7
4,185,780	+				+0.1
4,185,781	-				-0.8
4,185,795	-				-0.9
4,185,795	-				+0.3
4,185,795	-				-0.3
4,185,795	-				+1.4
4,185,877	+				-0.2
4,185,877	+				+0.3
4,185,877	+				-0.7
4,185,878	-				+0.7
4,185,879	+				-1.0
4,185,879	+				+0.3
4,185,879	+				+1.2
4,185,880	-				-0.1
4,185,880	-				-0.2
4,185,880	-				+0.2
4,185,880	-				+1.0
4,185,880	-				+0.5
4,185,880	-				-0.7
4,185,917	+				+0.8
4,185,917	+				+0.9
4,185,918	-				-3.1
4,185,918	-				-1.7
4,185,918	-				+0.8
4,185,924	+				-0.6
4,185,924	+				+1.3
4,185,924	+				+0.3
4,185,924	+				-0.9
4,185,924	+				+1.6
4,185,924	+				+0.0
4,185,925	-				-0.0
4,185,925	-				+0.4
4,185,962	+		PP_3682	0.20	+1.2
4,186,055	+		PP_3682	0.80	+2.4
4,186,055	+		PP_3682	0.80	-2.3
4,186,056	-		PP_3682	0.81	-0.1
4,186,064	+		PP_3682	0.86	+1.1
4,186,064	+		PP_3682	0.86	+0.2
4,186,064	+				+1.0
4,186,065	-		PP_3682	0.87	+0.9
4,186,091	+				+0.4
4,186,091	+				+2.5
4,186,092	-				+0.9
4,186,092	-				+1.0
4,186,138	+				-0.3
4,186,139	-				-0.7
4,186,139	-				-1.3
4,186,139	-				-0.0
4,186,142	+				-0.9
4,186,142	+				+0.2
4,186,143	-				+0.5
4,186,143	-				-1.4
4,186,181	+				+0.5
4,186,181	+				-1.0
4,186,181	+				-0.6
4,186,182	-				+1.3
4,186,182	-				-1.7
4,186,228	+				+0.6
4,186,228	+				+1.3
4,186,229	-				+0.1
4,186,283	+				-0.3
4,186,284	-				-0.2
4,186,284	-				+0.3
4,186,327	-				-0.6
4,186,387	+				+0.4
4,186,388	-				+0.4
4,186,417	+				+0.4
4,186,417	+				-1.0
4,186,426	+				-0.6
4,186,426	+				-0.0
4,186,426	+				+0.7
4,186,426	+				-0.6
4,186,494	+				+0.9
4,186,494	+				-0.2
4,186,494	+				+0.1
4,186,494	+				-0.3
4,186,494	+				-1.7
4,186,494	+				+1.2
4,186,495	-				-0.1
4,186,495	-				-0.6
4,186,495	-				-0.5
4,186,501	-				-2.4
4,186,516	+				-0.0
4,186,517	-				+0.3
4,186,517	-				+0.2
4,186,517	-				-1.0
4,186,526	+				-1.0
4,186,526	+				+0.1
4,186,526	+				-0.3
4,186,527	-				-1.2
4,186,527	-				-1.2
4,186,527	-				+1.0
4,186,527	-				+0.3
4,186,597	+				-1.1
4,186,610	+				+0.5
4,186,759	+				-0.6
4,186,774	+				+0.7
4,186,774	+				+0.1
4,186,774	+				-0.7
4,186,778	+				-1.7
4,186,778	+				+0.7
4,186,779	-		PP_3683	0.10	-0.3
4,186,779	-		PP_3683	0.10	+1.3
4,186,779	-		PP_3683	0.10	+0.1
4,186,836	+		PP_3683	0.15	+0.3
4,186,837	-		PP_3683	0.15	+1.1
4,186,837	-		PP_3683	0.15	+0.3
4,186,837	-		PP_3683	0.15	-0.7
4,186,931	+		PP_3683	0.22	+1.2
4,186,931	+		PP_3683	0.22	-0.3
4,186,932	-		PP_3683	0.22	-0.3
4,186,932	-		PP_3683	0.22	+0.6
4,186,932	-		PP_3683	0.22	+0.6
4,186,932	-		PP_3683	0.22	+0.2
4,186,932	-		PP_3683	0.22	-0.9
4,186,989	+		PP_3683	0.27	+0.5
4,186,989	+		PP_3683	0.27	-1.2
4,186,989	+		PP_3683	0.27	+0.1
4,186,989	+		PP_3683	0.27	+0.3
4,186,989	+		PP_3683	0.27	+0.8
4,186,989	+		PP_3683	0.27	-1.1
4,186,990	-		PP_3683	0.27	+0.0
4,186,990	-		PP_3683	0.27	+0.1
4,186,990	-				-0.6
4,187,073	+		PP_3683	0.34	-1.6
4,187,073	+		PP_3683	0.34	-0.7
4,187,074	-		PP_3683	0.34	-0.2