Strain Fitness in Pseudomonas putida KT2440 around PP_3486

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,948,581	+		PP_3484	0.89	-0.1
3,948,581	+		PP_3484	0.89	+1.3
3,948,582	-		PP_3484	0.89	-0.9
3,948,582	-		PP_3484	0.89	+1.5
3,948,622	+				+0.3
3,948,628	+				-1.1
3,948,629	-				-0.7
3,948,629	-				-1.4
3,948,629	-				-0.6
3,948,629	-				+0.5
3,948,658	-				-1.8
3,948,729	-				+0.7
3,948,747	+				-0.3
3,948,843	-				+0.9
3,949,009	+		PP_3485	0.18	-0.7
3,949,124	+				+1.4
3,949,124	+		PP_3485	0.36	+0.5
3,949,125	-		PP_3485	0.36	+0.5
3,949,125	-		PP_3485	0.36	+0.9
3,949,125	-		PP_3485	0.36	-0.8
3,949,157	+		PP_3485	0.41	-1.0
3,949,158	-		PP_3485	0.41	-1.0
3,949,158	-		PP_3485	0.41	+0.2
3,949,210	+		PP_3485	0.50	-0.2
3,949,281	+		PP_3485	0.61	-0.7
3,949,281	+		PP_3485	0.61	+0.4
3,949,356	+		PP_3485	0.72	-0.4
3,949,356	+		PP_3485	0.72	-0.3
3,949,356	+		PP_3485	0.72	-0.7
3,949,356	+		PP_3485	0.72	+1.4
3,949,357	-		PP_3485	0.72	+0.1
3,949,358	+		PP_3485	0.73	-0.9
3,949,410	-		PP_3485	0.81	-1.1
3,949,421	+				+0.0
3,949,422	-		PP_3485	0.83	+2.4
3,949,587	+				-0.3
3,949,788	+		PP_3486	0.16	-1.0
3,949,788	+		PP_3486	0.16	-0.6
3,949,789	-		PP_3486	0.16	+0.3
3,949,789	-		PP_3486	0.16	-1.3
3,949,789	-		PP_3486	0.16	-0.8
3,949,886	+		PP_3486	0.23	-0.3
3,949,949	-		PP_3486	0.27	+1.0
3,949,973	+		PP_3486	0.29	-0.7
3,949,973	+		PP_3486	0.29	-1.7
3,949,974	-		PP_3486	0.29	-0.7
3,950,162	+		PP_3486	0.41	-1.3
3,950,162	+		PP_3486	0.41	-1.9
3,950,163	-		PP_3486	0.41	+0.9
3,950,188	+		PP_3486	0.43	-0.8
3,950,444	-		PP_3486	0.60	-0.8
3,950,446	+		PP_3486	0.60	-0.5
3,950,447	-		PP_3486	0.60	+0.8
3,950,753	+		PP_3486	0.81	-0.1
3,950,910	+				-0.2
3,951,051	+				+0.1
3,951,052	-				-0.5
3,951,228	+				-0.1
3,951,387	-		PP_3487	0.23	-0.5
3,951,387	-		PP_3487	0.23	-0.2
3,951,387	-		PP_3487	0.23	+0.2
3,951,661	+		PP_3487	0.65	-0.5
3,951,941	+				+0.3
3,951,942	-				+0.5
3,952,002	+		PP_3488	0.17	+0.7
3,952,003	-		PP_3488	0.17	-0.5
3,952,005	+		PP_3488	0.17	+0.7
3,952,005	+		PP_3488	0.17	-1.5