Strain Fitness in Pseudomonas putida KT2440 around PP_3171

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,592,114	+		PP_3170	0.18	+0.1
3,592,492	-		PP_3170	0.59	-0.0
3,592,682	-		PP_3170	0.80	-0.3
3,592,682	-		PP_3170	0.80	-0.9
3,592,685	+		PP_3170	0.80	-1.7
3,592,685	+		PP_3170	0.80	+0.4
3,592,685	+		PP_3170	0.80	-0.2
3,592,685	+		PP_3170	0.80	+0.5
3,592,686	-		PP_3170	0.80	-0.8
3,592,686	-		PP_3170	0.80	+1.3
3,592,686	-		PP_3170	0.80	-1.7
3,592,686	-				-1.1
3,592,686	-		PP_3170	0.80	+1.2
3,592,686	-		PP_3170	0.80	+1.1
3,592,686	-		PP_3170	0.80	-0.4
3,592,686	-		PP_3170	0.80	-0.6
3,592,688	-		PP_3170	0.81	+0.4
3,592,729	-		PP_3170	0.85	-0.1
3,592,946	+				-0.3
3,593,073	+		PP_3171	0.11	-0.4
3,593,073	+		PP_3171	0.11	-0.2
3,593,074	-		PP_3171	0.11	-0.7
3,593,083	-		PP_3171	0.12	-0.9
3,593,193	-		PP_3171	0.23	+0.3
3,593,249	+		PP_3171	0.29	-1.0
3,593,249	+		PP_3171	0.29	-1.2
3,593,250	-		PP_3171	0.29	+0.4
3,593,250	-		PP_3171	0.29	-1.7
3,593,250	-		PP_3171	0.29	+0.0
3,593,379	+		PP_3171	0.42	-1.4
3,593,379	+		PP_3171	0.42	+0.3
3,593,379	+		PP_3171	0.42	-0.1
3,593,499	+		PP_3171	0.54	-0.0
3,593,499	+		PP_3171	0.54	-0.6
3,593,500	-		PP_3171	0.55	-1.3
3,593,500	-		PP_3171	0.55	-0.7
3,593,596	-		PP_3171	0.64	-0.3
3,593,913	+				+0.4
3,593,913	+				-0.2
3,593,914	-				+0.9
3,593,914	-				+0.3