Strain Fitness in Pseudomonas putida KT2440 around PP_3141

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,555,785	-		PP_3140	0.17	-0.1
3,555,785	-		PP_3140	0.17	+0.2
3,555,882	+		PP_3140	0.25	-1.4
3,555,882	+		PP_3140	0.25	+0.1
3,555,896	-		PP_3140	0.26	+0.7
3,555,917	+		PP_3140	0.28	+0.3
3,555,926	+		PP_3140	0.29	-0.5
3,556,065	-		PP_3140	0.40	-0.7
3,556,328	-		PP_3140	0.63	-0.3
3,556,343	-		PP_3140	0.64	-1.3
3,556,369	+		PP_3140	0.66	+0.4
3,556,448	-		PP_3140	0.73	+1.0
3,556,453	+		PP_3140	0.73	-1.5
3,556,507	-				-0.7
3,556,547	+		PP_3140	0.81	-0.1
3,556,548	-		PP_3140	0.81	-0.5
3,556,653	+				-0.1
3,556,674	-				+0.4
3,556,967	+		PP_3141	0.26	-0.5
3,556,967	+		PP_3141	0.26	-0.9
3,556,967	+		PP_3141	0.26	-2.2
3,556,968	-		PP_3141	0.26	+0.5
3,556,968	-		PP_3141	0.26	-0.7
3,556,968	-		PP_3141	0.26	-0.0
3,557,116	+		PP_3141	0.46	-1.5
3,557,117	-		PP_3141	0.46	+0.6
3,557,203	+		PP_3141	0.57	-1.6
3,557,404	+		PP_3141	0.84	-0.4
3,557,443	+		PP_3141	0.89	+0.8
3,557,443	+		PP_3141	0.89	-0.7
3,557,444	-		PP_3141	0.89	-1.3
3,557,444	-		PP_3141	0.89	-1.7
3,557,486	-				-1.6
3,557,520	-				-0.7
3,557,520	-				-0.9
3,557,581	-				+1.2
3,557,588	+				-1.1
3,557,589	-				-3.3
3,557,589	-				-0.2
3,557,634	+				+1.4
3,557,678	-				-0.9
3,557,678	-				+0.5
3,557,678	-				-1.2
3,557,678	-				-1.0
3,557,733	+				+0.8
3,557,786	-				-1.0
3,557,811	-				-0.9
3,557,819	+				-0.2
3,557,820	-				+0.4
3,557,837	-				+0.6
3,557,850	-		PP_3142	0.10	+0.5
3,557,894	+		PP_3142	0.14	-1.1
3,557,903	+		PP_3142	0.14	-0.6
3,558,024	-		PP_3142	0.23	-0.3
3,558,062	+		PP_3142	0.25	+0.7
3,558,145	+		PP_3142	0.31	-0.1
3,558,304	+		PP_3142	0.42	+1.3
3,558,305	-		PP_3142	0.42	+0.2
3,558,347	-		PP_3142	0.45	-1.5
3,558,347	-				+0.5
3,558,353	+		PP_3142	0.46	+0.2
3,558,399	-		PP_3142	0.49	+1.2
3,558,399	-		PP_3142	0.49	-0.7
3,558,472	+		PP_3142	0.54	+0.9