Strain Fitness in Pseudomonas putida KT2440 around PP_3098

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,493,326	-		PP_3097	0.52	-0.2
3,493,337	+		PP_3097	0.52	+0.9
3,493,338	-		PP_3097	0.52	+0.9
3,493,476	-		PP_3097	0.60	+1.2
3,493,503	-		PP_3097	0.62	+0.9
3,493,608	-		PP_3097	0.67	+0.6
3,493,804	+		PP_3097	0.78	+0.9
3,493,965	-		PP_3097	0.87	+0.4
3,493,969	+		PP_3097	0.87	+0.7
3,493,970	-		PP_3097	0.87	+0.9
3,493,970	-		PP_3097	0.87	+0.5
3,493,970	-		PP_3097	0.87	+0.9
3,494,181	-				+1.0
3,494,224	+				-0.0
3,494,225	-				-0.4
3,494,225	-				-0.8
3,494,575	+		PP_3098	0.77	+0.8
3,494,679	-				-1.1
3,494,698	-				+0.3
3,494,698	-				+0.4
3,494,779	-				+1.5
3,494,779	-				-1.2
3,494,793	+				+1.1
3,494,793	+				+0.0
3,494,809	-				-0.6
3,494,910	+		PP_3099	0.13	+0.2
3,494,910	+		PP_3099	0.13	+0.7
3,494,911	-		PP_3099	0.13	+1.6
3,494,997	+		PP_3099	0.19	+0.3
3,494,997	+		PP_3099	0.19	+0.5
3,494,997	+		PP_3099	0.19	-0.3
3,495,027	+		PP_3099	0.21	-0.6
3,495,027	+		PP_3099	0.21	+0.5
3,495,027	+		PP_3099	0.21	+1.6
3,495,027	+		PP_3099	0.21	+0.7
3,495,028	-		PP_3099	0.21	+0.1
3,495,028	-		PP_3099	0.21	-0.7
3,495,124	-		PP_3099	0.27	+0.4
3,495,375	+		PP_3099	0.44	+0.7
3,495,448	-		PP_3099	0.49	-0.9
3,495,531	+		PP_3099	0.55	+0.3
3,495,531	+		PP_3099	0.55	+0.9
3,495,675	+		PP_3099	0.64	+1.2
3,495,675	+		PP_3099	0.64	+0.0
3,495,675	+		PP_3099	0.64	-0.1
3,495,675	+				-1.7
3,495,676	-		PP_3099	0.64	+0.4
3,495,676	-		PP_3099	0.64	+0.4
3,495,676	-		PP_3099	0.64	+0.8
3,495,676	-				+1.4
3,495,676	-		PP_3099	0.64	+1.1