Strain Fitness in Pseudomonas putida KT2440 around PP_3096

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,490,552	-		PP_3095	0.68	-0.1
3,490,782	-		PP_3095	0.77	+0.4
3,491,117	+		PP_3095	0.90	+1.0
3,491,182	+				+0.2
3,491,183	-				+0.1
3,491,261	-				-0.2
3,491,261	-				+0.3
3,491,261	-				-0.1
3,491,261	-				-0.1
3,491,367	+				+0.9
3,491,531	+		PP_3096	0.17	+0.9
3,491,531	+		PP_3096	0.17	-0.2
3,491,531	+		PP_3096	0.17	+0.3
3,491,531	+		PP_3096	0.17	+1.3
3,491,531	+		PP_3096	0.17	+1.3
3,491,532	-		PP_3096	0.17	+1.0
3,491,532	-		PP_3096	0.17	-0.2
3,491,532	-		PP_3096	0.17	+0.0
3,491,532	-		PP_3096	0.17	-0.2
3,491,533	+		PP_3096	0.17	+0.5
3,491,533	+		PP_3096	0.17	-0.2
3,491,535	+		PP_3096	0.17	+0.9
3,491,535	+		PP_3096	0.17	+0.6
3,491,535	+		PP_3096	0.17	+1.3
3,491,535	+		PP_3096	0.17	-0.4
3,491,536	-		PP_3096	0.18	-1.0
3,491,536	-		PP_3096	0.18	+1.3
3,491,756	+		PP_3096	0.38	+0.8
3,491,757	-		PP_3096	0.38	-0.2
3,491,778	+		PP_3096	0.40	-1.0
3,491,778	+		PP_3096	0.40	+0.8
3,491,778	+		PP_3096	0.40	+0.2
3,491,779	-		PP_3096	0.40	+0.8
3,492,100	-		PP_3096	0.70	-0.2
3,492,421	+				+0.5
3,492,421	+				+1.1
3,492,421	+				+0.1
3,492,421	+				+0.6
3,492,422	-				-1.0
3,492,422	-				+0.1
3,492,683	+		PP_3097	0.17	-0.0
3,492,689	+		PP_3097	0.17	+1.0
3,492,689	+		PP_3097	0.17	+0.6
3,492,690	-		PP_3097	0.17	+1.3
3,492,934	-		PP_3097	0.30	+1.2
3,493,326	-		PP_3097	0.52	-0.2
3,493,337	+		PP_3097	0.52	+0.9
3,493,338	-		PP_3097	0.52	+0.9