Strain Fitness in Pseudomonas putida KT2440 around PP_3093

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,485,737	+				+1.0
3,485,746	-				-1.2
3,485,763	-				-0.6
3,485,913	-				+1.2
3,485,947	+				+2.4
3,485,948	-				+0.5
3,486,066	+		PP_3092	0.16	+1.1
3,486,066	+		PP_3092	0.16	+0.8
3,486,067	-		PP_3092	0.16	-0.9
3,486,081	-		PP_3092	0.18	+0.5
3,486,081	-		PP_3092	0.18	-1.8
3,486,181	+		PP_3092	0.32	+0.7
3,486,182	-		PP_3092	0.32	+0.1
3,486,182	-		PP_3092	0.32	+1.0
3,486,182	-		PP_3092	0.32	-0.2
3,486,258	+		PP_3092	0.42	+1.0
3,486,258	+		PP_3092	0.42	+0.8
3,486,259	-		PP_3092	0.43	+0.7
3,486,352	-		PP_3092	0.56	+0.3
3,486,444	+		PP_3092	0.68	+0.3
3,486,474	+		PP_3092	0.73	+0.0
3,486,474	+		PP_3092	0.73	+0.8
3,486,474	+		PP_3092	0.73	+0.1
3,486,475	-		PP_3092	0.73	+0.5
3,486,475	-		PP_3092	0.73	+0.5
3,486,527	-		PP_3092	0.80	+0.9
3,486,527	-		PP_3092	0.80	+1.2
3,486,705	+				+2.2
3,486,722	+				+1.0
3,486,759	-				+0.2
3,486,759	-				-1.4
3,486,965	+		PP_3093	0.22	+1.2
3,486,965	+		PP_3093	0.22	-3.2
3,486,965	+				+2.2
3,486,965	+		PP_3093	0.22	+1.4
3,486,965	+		PP_3093	0.22	-0.7
3,486,966	-		PP_3093	0.22	+0.6
3,486,966	-				-0.2
3,486,966	-		PP_3093	0.22	+1.2
3,486,966	-		PP_3093	0.22	+0.0
3,486,966	-		PP_3093	0.22	+0.5
3,486,966	-		PP_3093	0.22	-0.2
3,487,208	+		PP_3093	0.40	+0.3
3,487,208	+		PP_3093	0.40	+1.7
3,487,209	-		PP_3093	0.40	+0.1
3,487,244	-		PP_3093	0.43	-0.4
3,487,244	-		PP_3093	0.43	+0.8
3,487,244	-		PP_3093	0.43	+1.7
3,487,244	-		PP_3093	0.43	-0.2
3,487,300	+		PP_3093	0.47	+0.2
3,487,300	+		PP_3093	0.47	+0.2
3,487,300	+		PP_3093	0.47	+1.1
3,487,300	+				-0.2
3,487,300	+				-1.5
3,487,301	-				+0.8
3,487,301	-		PP_3093	0.47	-0.8
3,487,517	+		PP_3093	0.63	+0.4
3,487,549	+		PP_3093	0.66	+0.7
3,487,550	-		PP_3093	0.66	+1.1
3,487,600	-		PP_3093	0.69	-0.3
3,487,670	+		PP_3093	0.75	-0.1
3,487,670	+		PP_3093	0.75	+0.1
3,487,670	+		PP_3093	0.75	-1.1
3,487,671	-		PP_3093	0.75	+2.1
3,487,709	+		PP_3093	0.78	+1.3
3,487,709	+		PP_3093	0.78	-0.6
3,487,709	+		PP_3093	0.78	+1.7
3,487,709	+		PP_3093	0.78	+2.1
3,487,709	+		PP_3093	0.78	-0.3
3,487,710	-		PP_3093	0.78	+0.3
3,487,787	+		PP_3093	0.83	-0.2
3,488,026	-				-0.8
3,488,187	+		PP_3094	0.25	+1.0
3,488,188	-		PP_3094	0.25	-0.8
3,488,261	+		PP_3094	0.35	+0.6
3,488,262	-		PP_3094	0.35	+0.4
3,488,347	+		PP_3094	0.47	+0.9
3,488,956	+				+0.0
3,488,956	+				+1.2
3,488,957	-				-0.3
3,488,957	-				+3.3