Strain Fitness in Pseudomonas putida KT2440 around PP_3091

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,481,178	+				+1.2
3,481,178	+				-0.5
3,481,178	+				+1.3
3,481,179	-				+1.0
3,481,179	-				-1.1
3,481,199	+				+0.2
3,481,199	+				+0.3
3,481,199	+				+0.4
3,481,203	-				+0.1
3,481,218	+				-0.0
3,481,280	-				-0.7
3,481,396	+		PP_5561	0.20	+0.3
3,481,396	+		PP_5561	0.20	+1.5
3,481,506	-		PP_5561	0.32	+0.4
3,481,506	-		PP_5561	0.32	-0.6
3,481,841	+		PP_5561	0.69	-0.2
3,481,841	+		PP_5561	0.69	+0.7
3,481,952	-		PP_5561	0.81	+0.0
3,482,430	+				+0.9
3,482,612	+		PP_3091	0.13	+1.0
3,482,613	-		PP_3091	0.13	+0.2
3,482,690	+		PP_3091	0.15	+1.3
3,482,690	+		PP_3091	0.15	+0.7
3,482,690	+		PP_3091	0.15	+0.5
3,482,691	-		PP_3091	0.15	+0.9
3,482,847	+		PP_3091	0.19	+0.6
3,483,295	+		PP_3091	0.31	+1.7
3,483,424	-		PP_3091	0.34	+0.5
3,483,424	-		PP_3091	0.34	-0.0
3,483,438	+		PP_3091	0.35	+1.8
3,483,631	-		PP_3091	0.40	+0.8
3,483,717	+		PP_3091	0.42	+0.5
3,483,718	-		PP_3091	0.42	+0.6
3,483,837	+		PP_3091	0.45	+1.7
3,483,837	+		PP_3091	0.45	+1.1
3,483,837	+		PP_3091	0.45	+0.4
3,483,972	+		PP_3091	0.49	-0.3
3,483,973	-		PP_3091	0.49	+0.6
3,483,990	+		PP_3091	0.49	+0.8
3,483,991	-		PP_3091	0.49	-0.2
3,483,991	-		PP_3091	0.49	+0.7
3,484,258	+		PP_3091	0.56	+1.1
3,484,258	+		PP_3091	0.56	+0.9
3,484,259	-		PP_3091	0.56	-0.2
3,484,259	-		PP_3091	0.56	-0.0
3,484,259	-		PP_3091	0.56	+0.8
3,484,607	+		PP_3091	0.65	-0.2
3,484,607	+		PP_3091	0.65	+1.0
3,484,755	+		PP_3091	0.69	+0.5
3,484,755	+		PP_3091	0.69	+0.3
3,484,797	+		PP_3091	0.70	+0.3
3,484,798	-		PP_3091	0.70	+0.4
3,484,798	-		PP_3091	0.70	+0.8
3,484,842	+		PP_3091	0.72	+1.0
3,484,842	+		PP_3091	0.72	-0.7
3,484,843	-		PP_3091	0.72	+1.4
3,484,854	-		PP_3091	0.72	+0.4
3,484,936	-		PP_3091	0.74	-0.1
3,485,214	+		PP_3091	0.81	-0.2
3,485,339	-		PP_3091	0.85	+0.6
3,485,553	+				+0.7
3,485,737	+				+1.0
3,485,746	-				-1.2
3,485,763	-				-0.6
3,485,913	-				+1.2
3,485,947	+				+2.4
3,485,948	-				+0.5
3,486,066	+		PP_3092	0.16	+1.1
3,486,066	+		PP_3092	0.16	+0.8
3,486,067	-		PP_3092	0.16	-0.9
3,486,081	-		PP_3092	0.18	+0.5
3,486,081	-		PP_3092	0.18	-1.8
3,486,181	+		PP_3092	0.32	+0.7
3,486,182	-		PP_3092	0.32	+0.1
3,486,182	-		PP_3092	0.32	+1.0
3,486,182	-		PP_3092	0.32	-0.2
3,486,258	+		PP_3092	0.42	+1.0
3,486,258	+		PP_3092	0.42	+0.8
3,486,259	-		PP_3092	0.43	+0.7
3,486,352	-		PP_3092	0.56	+0.3
3,486,444	+		PP_3092	0.68	+0.3
3,486,474	+		PP_3092	0.73	+0.0
3,486,474	+		PP_3092	0.73	+0.8
3,486,474	+		PP_3092	0.73	+0.1
3,486,475	-		PP_3092	0.73	+0.5
3,486,475	-		PP_3092	0.73	+0.5
3,486,527	-		PP_3092	0.80	+0.9
3,486,527	-		PP_3092	0.80	+1.2
3,486,705	+				+2.2
3,486,722	+				+1.0
3,486,759	-				+0.2
3,486,759	-				-1.4