Strain Fitness in Pseudomonas putida KT2440 around PP_3089

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,477,198	+		PP_3088	0.29	-0.5
3,477,199	-		PP_3088	0.29	+0.1
3,477,205	-		PP_3088	0.30	+0.8
3,477,387	-		PP_3088	0.47	+0.4
3,477,480	+		PP_3088	0.55	+0.2
3,477,480	+		PP_3088	0.55	-0.5
3,477,480	+		PP_3088	0.55	-0.5
3,477,480	+		PP_3088	0.55	+1.8
3,477,480	+		PP_3088	0.55	+0.7
3,477,480	+		PP_3088	0.55	+0.4
3,477,481	-		PP_3088	0.55	-0.5
3,477,481	-		PP_3088	0.55	-0.9
3,477,481	-		PP_3088	0.55	-0.6
3,477,500	-		PP_3088	0.57	+0.7
3,477,623	-		PP_3088	0.68	+1.0
3,477,836	-		PP_3088	0.88	+0.3
3,477,965	+				+0.5
3,477,965	+				+0.2
3,477,966	-				-0.8
3,477,966	-				+0.4
3,477,966	-				+0.7
3,477,985	+				-0.5
3,477,986	-				+0.7
3,478,062	+				+0.8
3,478,146	+		PP_3089	0.16	+0.8
3,478,146	+		PP_3089	0.16	+2.1
3,478,146	+		PP_3089	0.16	+0.7
3,478,146	+		PP_3089	0.16	+0.5
3,478,146	+		PP_3089	0.16	+0.5
3,478,146	+		PP_3089	0.16	+0.8
3,478,147	-		PP_3089	0.16	-0.2
3,478,533	-		PP_3089	0.87	+0.1
3,478,533	-		PP_3089	0.87	+0.7
3,478,561	+				+0.8
3,478,563	+				+0.0
3,478,563	+				+0.8
3,478,563	+				+0.8
3,478,563	+				+1.1
3,478,563	+				+0.9
3,478,564	-				+0.3
3,478,564	-				+0.9
3,478,564	-				+0.2
3,478,564	-				+0.9
3,478,596	-				-0.5
3,478,596	-				+0.8
3,478,605	+				-0.0
3,478,605	+				-0.0
3,478,605	+				+0.8
3,478,606	-				-0.3
3,478,606	-				-0.4
3,478,661	+				-0.2
3,478,662	-				-0.4
3,478,728	+				+0.8
3,478,729	-				-0.8
3,478,864	+				+0.7
3,478,884	-				-1.8
3,478,884	-				-0.7
3,478,980	+		PP_3090	0.10	+0.7
3,479,141	+		PP_3090	0.17	+0.5
3,479,141	+		PP_3090	0.17	+1.0
3,479,142	-		PP_3090	0.17	+0.8
3,479,216	+		PP_3090	0.20	-0.3
3,479,216	+		PP_3090	0.20	+0.9
3,479,216	+		PP_3090	0.20	+0.4
3,479,217	-		PP_3090	0.20	-0.1
3,479,217	-		PP_3090	0.20	+0.6
3,479,217	-		PP_3090	0.20	+0.0
3,479,241	-		PP_3090	0.21	-0.5
3,479,246	+		PP_3090	0.21	+0.3
3,479,246	+		PP_3090	0.21	+0.7
3,479,246	+		PP_3090	0.21	-0.0
3,479,247	-		PP_3090	0.21	-0.5
3,479,393	+		PP_3090	0.27	+1.1
3,479,394	-		PP_3090	0.27	+0.6
3,479,394	-		PP_3090	0.27	-0.7
3,479,394	-		PP_3090	0.27	+0.1
3,479,394	-		PP_3090	0.27	+0.4
3,479,394	-		PP_3090	0.27	-0.0
3,479,467	+		PP_3090	0.30	+0.3
3,479,468	-		PP_3090	0.30	+0.8
3,479,468	-		PP_3090	0.30	-0.3
3,479,559	+		PP_3090	0.33	+0.8
3,479,575	+		PP_3090	0.34	+0.5
3,479,575	+		PP_3090	0.34	+1.0
3,479,603	+		PP_3090	0.35	+1.1