Strain Fitness in Pseudomonas putida KT2440 around PP_3026

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,412,015	+				+0.8
3,412,015	+				-0.4
3,412,068	-				+0.2
3,412,108	+				-0.3
3,412,108	+				-0.7
3,412,108	+				-1.6
3,412,109	-				-0.6
3,412,109	-				+0.1
3,412,109	-				+0.4
3,412,114	+				-0.3
3,412,132	+				+0.2
3,412,133	-				+0.1
3,412,166	-				-0.9
3,412,183	+				+0.2
3,412,184	-				-0.0
3,412,205	+				-0.9
3,412,206	-				+0.6
3,412,331	+		PP_3025	0.20	-0.4
3,412,332	-		PP_3025	0.21	+0.5
3,412,501	+		PP_3025	0.48	-0.6
3,412,572	-		PP_3025	0.59	+0.4
3,412,607	+		PP_3025	0.65	-1.6
3,412,613	-		PP_3025	0.66	+0.1
3,412,663	+		PP_3025	0.74	-1.6
3,412,663	+		PP_3025	0.74	-0.6
3,412,685	-		PP_3025	0.77	-0.6
3,412,725	-		PP_3025	0.84	-1.0
3,412,795	+				+0.0
3,412,801	+				-0.1
3,412,836	+				-1.5
3,412,903	-				+1.4
3,412,949	+				+0.2
3,412,950	-				+0.7
3,412,952	+				-0.9
3,412,952	+				-0.3
3,412,952	+				+0.2
3,412,952	+				-0.5
3,412,953	-				+0.8
3,412,953	-				-0.4
3,412,954	+				-0.3
3,412,954	+				-0.9
3,412,955	-				+0.1
3,412,955	-				-0.0
3,412,955	-				+0.4
3,412,955	-				+1.7
3,412,956	+				-1.1
3,412,956	+				-0.3
3,412,956	+				+0.7
3,412,956	+				+0.1
3,412,957	-				+0.7
3,412,957	-				+0.6
3,412,990	+				+1.2
3,412,990	+				+0.0
3,412,991	-				-0.8
3,412,991	-				+1.9
3,412,991	-				+2.4
3,413,015	+				-0.0
3,413,015	+				+0.7
3,413,015	+				-0.8
3,413,015	+				+0.5
3,413,015	+				+0.9
3,413,016	-				+1.2
3,413,016	-				+0.8
3,413,021	+				+1.2
3,413,022	-				+3.0
3,413,022	-				+1.3
3,413,022	-				-1.5
3,413,059	+				+2.0
3,413,081	+				-0.0
3,413,081	+				+0.8
3,413,082	-				+1.0
3,413,113	+				+1.6
3,413,113	+				+0.0
3,413,113	+				+0.7
3,413,113	+				-0.0
3,413,114	-				+0.1
3,413,118	+				+0.4
3,413,119	-				+0.9
3,413,119	-				+0.2
3,413,176	+		PP_3026	0.11	-0.1
3,413,190	+		PP_3026	0.12	+1.2
3,413,190	+		PP_3026	0.12	+0.3
3,413,190	+		PP_3026	0.12	+0.0
3,413,286	+		PP_3026	0.18	+1.1
3,413,286	+		PP_3026	0.18	+0.6
3,413,360	+		PP_3026	0.23	+0.7
3,413,402	+		PP_3026	0.25	+1.8
3,413,404	+		PP_3026	0.25	-0.8
3,413,405	-		PP_3026	0.25	+0.0
3,413,611	-		PP_3026	0.38	+0.1
3,413,618	+		PP_3026	0.39	+0.9
3,413,619	-		PP_3026	0.39	+0.4
3,413,684	+		PP_3026	0.43	-0.6
3,413,711	+		PP_3026	0.44	+0.9
3,413,711	+		PP_3026	0.44	+1.4
3,413,802	+		PP_3026	0.50	+1.1
3,413,902	+		PP_3026	0.56	-0.4
3,413,905	+		PP_3026	0.56	+0.2
3,413,905	+		PP_3026	0.56	+0.9
3,413,905	+		PP_3026	0.56	+1.2
3,413,910	-		PP_3026	0.57	+0.5
3,413,910	-		PP_3026	0.57	+1.6
3,413,910	-		PP_3026	0.57	+1.1
3,413,919	-		PP_3026	0.57	+0.6
3,413,956	+		PP_3026	0.59	+0.3
3,413,957	-		PP_3026	0.59	+0.8
3,413,957	-		PP_3026	0.59	+0.6
3,413,957	-		PP_3026	0.59	+1.2
3,413,998	+		PP_3026	0.62	+0.8
3,413,999	-		PP_3026	0.62	-0.1
3,414,014	+		PP_3026	0.63	+0.0
3,414,015	-		PP_3026	0.63	+0.5
3,414,117	+		PP_3026	0.69	+0.2
3,414,159	+		PP_3026	0.72	+0.6
3,414,180	+		PP_3026	0.73	+1.7
3,414,180	+		PP_3026	0.73	+0.4
3,414,181	-		PP_3026	0.73	+1.0
3,414,211	+		PP_3026	0.75	-0.6
3,414,246	+		PP_3026	0.77	-0.0
3,414,246	+		PP_3026	0.77	+0.7
3,414,265	-		PP_3026	0.78	+1.8
3,414,265	-		PP_3026	0.78	+1.7
3,414,374	-		PP_3026	0.85	+0.4
3,414,374	-		PP_3026	0.85	+1.3
3,414,430	+		PP_3026	0.88	+1.0
3,414,454	+				+1.3
3,414,455	-				+2.2
3,414,476	+				+0.9
3,414,477	-				+0.4
3,414,490	-				+0.3
3,414,490	-				+1.4
3,414,490	-				-0.4
3,414,515	+				+0.7
3,414,515	+				+0.3
3,414,516	-				+1.6
3,414,516	-				+0.4
3,414,522	-				-0.3
3,414,621	+				-0.0
3,414,622	-				-0.1
3,414,641	+				+0.5
3,414,642	-				-2.2
3,414,642	-				+0.9
3,414,661	+				+1.1
3,414,662	-				+1.8
3,414,719	+				+0.2
3,414,842	-				-0.6
3,414,849	-				-0.0
3,414,849	-				-1.4
3,414,874	+				+0.1
3,414,897	+				+0.4
3,414,898	-				-0.4
3,414,898	-				-0.2
3,414,913	+		PP_3027	0.11	+0.8
3,414,914	-		PP_3027	0.11	-0.6
3,414,914	-		PP_3027	0.11	+0.3
3,414,959	+		PP_3027	0.32	-1.2
3,414,960	-		PP_3027	0.32	-0.2
3,414,960	-		PP_3027	0.32	-2.0
3,414,960	-		PP_3027	0.32	-0.2
3,414,960	-		PP_3027	0.32	+0.1
3,414,972	+		PP_3027	0.38	+0.7
3,414,972	+		PP_3027	0.38	+0.5
3,414,973	-		PP_3027	0.38	+0.1
3,414,973	-		PP_3027	0.38	-0.6
3,414,973	-		PP_3027	0.38	+1.2
3,414,973	-		PP_3027	0.38	-1.0
3,415,107	+				-0.5
3,415,138	+		PP_3028	0.12	+0.3
3,415,138	+		PP_3028	0.12	+0.3
3,415,138	+		PP_3028	0.12	+2.3
3,415,138	+		PP_3028	0.12	+0.4
3,415,139	-		PP_3028	0.12	-1.3
3,415,154	+		PP_3028	0.17	-0.7
3,415,154	+		PP_3028	0.17	-1.2
3,415,332	+		PP_3028	0.74	+0.2
3,415,332	+		PP_3028	0.74	-0.2
3,415,359	+		PP_3028	0.82	+0.6
3,415,360	-		PP_3028	0.83	+0.3
3,415,360	-		PP_3028	0.83	-0.2
3,415,360	-		PP_3028	0.83	-0.4
3,415,360	-		PP_3028	0.83	+0.5
3,415,389	+				-0.4
3,415,389	+				-0.4
3,415,389	+				-1.4
3,415,390	-				+0.5
3,415,524	+				-1.1
3,415,524	+				+0.6
3,415,524	+				-0.1
3,415,525	-				-0.1
3,415,525	-				+0.1
3,415,589	+				-0.4
3,415,589	+				+0.5
3,415,590	-				-0.1
3,415,590	-				-0.3