Strain Fitness in Pseudomonas putida KT2440 around PP_2724

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,109,402	+				+1.9
3,109,402	+				-0.2
3,109,403	-				-0.1
3,109,403	-				+2.0
3,109,403	-				+0.1
3,109,403	-				-0.1
3,109,589	+		PP_2723	0.31	-1.0
3,109,815	-		PP_2723	0.57	-0.4
3,109,964	-		PP_2723	0.75	-0.0
3,109,996	+		PP_2723	0.78	-1.2
3,109,997	-		PP_2723	0.79	-1.3
3,110,081	-		PP_2723	0.88	-0.0
3,110,166	-				-0.7
3,110,166	-				-1.9
3,110,313	+				-1.9
3,110,487	-		PP_2724	0.21	-0.7
3,110,555	+		PP_2724	0.34	-0.1
3,110,556	-		PP_2724	0.34	-0.6
3,110,556	-		PP_2724	0.34	+0.4
3,110,556	-		PP_2724	0.34	-1.0
3,110,690	-		PP_2724	0.60	-1.8
3,110,753	+		PP_2724	0.72	-0.8
3,110,753	+		PP_2724	0.72	-0.6
3,111,063	+		PP_2725	0.20	+0.6
3,111,102	-		PP_2725	0.27	-1.8
3,111,102	-		PP_2725	0.27	-0.0
3,111,355	+		PP_2725	0.73	-0.7
3,111,516	-				+0.4
3,111,526	+				+0.2
3,111,526	+				+0.0
3,111,574	-				-1.4
3,111,629	+				+1.2
3,111,629	+				-0.4
3,111,629	+				+1.3
3,111,630	-				+0.3
3,111,630	-				-0.8
3,111,790	+		PP_2726	0.29	-0.6
3,111,797	-		PP_2726	0.30	+2.0
3,111,871	-		PP_2726	0.41	+1.0