Strain Fitness in Pseudomonas putida KT2440 around PP_2705

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,096,134	-		PP_2704	0.31	-0.9
3,096,166	-		PP_2704	0.34	-0.3
3,096,263	-		PP_2704	0.42	+0.1
3,096,263	-		PP_2704	0.42	+0.8
3,096,263	-		PP_2704	0.42	+0.4
3,096,464	+		PP_2704	0.59	-0.3
3,096,465	-		PP_2704	0.59	-0.2
3,096,465	-		PP_2704	0.59	+0.4
3,096,507	-		PP_2704	0.63	-1.3
3,096,623	+		PP_2704	0.73	+1.5
3,096,785	+		PP_2704	0.86	-0.4
3,096,785	+		PP_2704	0.86	+1.2
3,096,786	-		PP_2704	0.86	+0.7
3,096,786	-		PP_2704	0.86	-1.4
3,096,786	-		PP_2704	0.86	+2.5
3,096,813	-		PP_2704	0.89	-0.8
3,096,813	-		PP_2704	0.89	-0.1
3,096,863	-				-0.3
3,097,141	+		PP_2705	0.43	+0.0
3,097,142	-		PP_2705	0.43	+2.7
3,097,143	+		PP_2705	0.43	+0.5
3,097,143	+		PP_2705	0.43	+1.0
3,097,144	-		PP_2705	0.44	-0.5
3,097,321	+				-1.0
3,097,438	-		PP_2706	0.16	+0.2
3,097,961	+		PP_2707	0.41	+1.6
3,097,961	+		PP_2707	0.41	+0.1
3,098,117	+		PP_2707	0.60	-0.1
3,098,117	+		PP_2707	0.60	+0.9
3,098,117	+		PP_2707	0.60	-0.0
3,098,117	+		PP_2707	0.60	+0.6
3,098,117	+		PP_2707	0.60	-1.7
3,098,117	+		PP_2707	0.60	+1.4
3,098,117	+		PP_2707	0.60	+0.3
3,098,117	+		PP_2707	0.60	-2.0
3,098,118	-		PP_2707	0.60	-0.1
3,098,118	-		PP_2707	0.60	+0.9
3,098,118	-		PP_2707	0.60	+0.4
3,098,118	-		PP_2707	0.60	-0.5
3,098,118	-		PP_2707	0.60	-1.3
3,098,118	-		PP_2707	0.60	-0.7
3,098,118	-		PP_2707	0.60	-0.9
3,098,118	-		PP_2707	0.60	-1.5
3,098,118	-		PP_2707	0.60	+2.1
3,098,120	-		PP_2707	0.61	-1.2
3,098,174	+		PP_2707	0.67	-0.8
3,098,211	+		PP_2707	0.72	+1.1
3,098,240	+		PP_2707	0.76	-1.1
3,098,240	+				-0.1
3,098,241	-		PP_2707	0.76	+0.1
3,098,241	-		PP_2707	0.76	+1.2
3,098,241	-		PP_2707	0.76	-0.1
3,098,256	-		PP_2707	0.78	+0.5
3,098,330	+		PP_2707	0.87	+0.3