Strain Fitness in Pseudomonas putida KT2440 around PP_2693

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,083,283	-		PP_2692	0.49	+0.7
3,083,283	-		PP_2692	0.49	-0.6
3,083,290	-		PP_2692	0.50	-0.7
3,083,332	+		PP_2692	0.53	-0.5
3,083,332	+		PP_2692	0.53	-1.1
3,083,529	+		PP_2692	0.65	+0.4
3,083,529	+		PP_2692	0.65	+1.3
3,083,801	+		PP_2692	0.83	-0.6
3,083,801	+		PP_2692	0.83	+1.0
3,083,802	-		PP_2692	0.83	-0.2
3,083,872	-		PP_2692	0.87	-0.4
3,084,307	+		PP_2693	0.19	-1.1
3,084,308	-		PP_2693	0.19	-0.7
3,084,737	-		PP_2693	0.62	-0.4
3,084,769	+		PP_2693	0.65	-1.2
3,084,867	-		PP_2693	0.75	-0.2
3,085,053	+				-0.7
3,085,054	-				+0.8
3,085,054	-				+0.9
3,085,055	+				+0.3
3,085,056	-				+1.0
3,085,116	+				+0.3
3,085,116	+				+0.4
3,085,116	+				-0.5
3,085,117	-				+0.5
3,085,117	-				-0.0
3,085,136	+				-0.3
3,085,137	-				+0.3
3,085,158	-				-1.3
3,085,172	+				+0.4
3,085,172	+				+0.9
3,085,209	+				+1.1
3,085,209	+				+0.2
3,085,233	-				-1.0
3,085,233	-				-0.9
3,085,478	+		PP_2694	0.25	+0.9
3,085,478	+		PP_2694	0.25	+0.2
3,085,478	+		PP_2694	0.25	+0.2
3,085,478	+		PP_2694	0.25	-1.2
3,085,478	+		PP_2694	0.25	+1.1
3,085,479	-		PP_2694	0.25	+0.9
3,085,479	-				-1.1
3,085,481	+		PP_2694	0.25	-0.6
3,085,482	-		PP_2694	0.25	-0.8
3,085,482	-		PP_2694	0.25	-0.7
3,085,519	+		PP_2694	0.27	-0.9
3,085,519	+		PP_2694	0.27	+0.1
3,085,592	-		PP_2694	0.33	-0.0