Strain Fitness in Pseudomonas putida KT2440 around PP_2595

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
2,964,193	-		PP_2594	0.28	+1.2
2,964,226	+		PP_2594	0.32	+1.0
2,964,226	+		PP_2594	0.32	+0.8
2,964,289	+		PP_2594	0.38	-0.1
2,964,289	+		PP_2594	0.38	+0.1
2,964,295	+		PP_2594	0.39	-0.9
2,964,296	-		PP_2594	0.39	+1.1
2,964,296	-		PP_2594	0.39	-0.3
2,964,296	-		PP_2594	0.39	+0.7
2,964,410	-		PP_2594	0.51	-1.2
2,964,415	+		PP_2594	0.52	-0.1
2,964,415	+		PP_2594	0.52	+0.1
2,964,416	-		PP_2594	0.52	-0.0
2,964,449	-		PP_2594	0.55	-0.8
2,964,493	-		PP_2594	0.60	-0.9
2,964,714	+		PP_2594	0.83	+0.8
2,964,715	-		PP_2594	0.84	-0.3
2,964,779	+				-0.2
2,964,942	+				+2.2
2,964,943	-				-1.3
2,964,943	-				+0.4
2,964,943	-				+0.2
2,965,015	+				+0.9
2,965,154	+		PP_2595	0.16	-0.6
2,965,244	-		PP_2595	0.21	-0.4
2,965,244	-		PP_2595	0.21	+1.9
2,965,388	+		PP_2595	0.30	+0.9
2,965,389	-		PP_2595	0.30	+1.2
2,965,613	+		PP_2595	0.42	+1.0
2,966,045	-		PP_2595	0.67	+0.8
2,966,218	+		PP_2595	0.77	-0.4
2,966,219	-		PP_2595	0.77	+1.4
2,966,481	-				-0.1
2,966,481	-				-0.6
2,966,495	+				+1.0
2,966,495	+				-0.0
2,966,496	-				+0.9
2,966,544	-				-1.4
2,966,550	+				-0.7
2,966,571	+				+1.5
2,966,685	-				+1.0
2,966,685	-				+0.3
2,966,987	+		PP_2596	0.20	-0.7
2,967,137	-		PP_2596	0.29	-0.5
2,967,147	-		PP_2596	0.29	-1.8
2,967,224	-		PP_2596	0.34	-1.3
2,967,474	+		PP_2596	0.48	+0.7
2,967,479	+		PP_2596	0.48	+0.6
2,967,479	+		PP_2596	0.48	+0.4
2,967,479	+		PP_2596	0.48	+0.6
2,967,480	-		PP_2596	0.48	-0.3
2,967,535	+		PP_2596	0.51	+0.1
2,967,535	+		PP_2596	0.51	-0.1
2,967,536	-		PP_2596	0.51	+1.2
2,967,536	-		PP_2596	0.51	-0.1
2,967,542	-		PP_2596	0.51	-0.9