Strain Fitness in Pseudomonas putida KT2440 around PP_2516

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
2,862,008	+				+0.6
2,862,008	+				+0.0
2,862,011	+				+1.1
2,862,011	+				-1.1
2,862,012	-				-0.2
2,862,012	-				+1.7
2,862,012	-				-2.6
2,862,012	-				+0.2
2,862,134	-		PP_2515	0.11	+0.4
2,862,165	-		PP_2515	0.15	+1.3
2,862,174	+		PP_2515	0.16	-1.5
2,862,174	+		PP_2515	0.16	-0.1
2,862,174	+		PP_2515	0.16	+0.7
2,862,174	+		PP_2515	0.16	-1.0
2,862,174	+		PP_2515	0.16	-0.6
2,862,175	-		PP_2515	0.16	+0.7
2,862,175	-		PP_2515	0.16	-0.6
2,862,175	-		PP_2515	0.16	+0.4
2,862,177	+		PP_2515	0.17	+0.9
2,862,177	+		PP_2515	0.17	+0.0
2,862,178	-		PP_2515	0.17	-1.9
2,862,178	-		PP_2515	0.17	-1.4
2,862,222	+		PP_2515	0.23	+0.4
2,862,223	-		PP_2515	0.23	+0.4
2,862,244	+		PP_2515	0.25	+0.3
2,862,244	+		PP_2515	0.25	+0.3
2,862,245	-		PP_2515	0.25	+0.8
2,862,306	+		PP_2515	0.33	+0.3
2,862,346	-		PP_2515	0.38	+1.5
2,862,364	+		PP_2515	0.41	+1.0
2,862,409	-		PP_2515	0.47	-0.9
2,862,409	-		PP_2515	0.47	-1.7
2,862,414	+		PP_2515	0.47	+0.5
2,862,414	+		PP_2515	0.47	-0.6
2,862,414	+		PP_2515	0.47	-0.9
2,862,414	+		PP_2515	0.47	+0.7
2,862,440	+		PP_2515	0.51	-0.3
2,862,441	-		PP_2515	0.51	+1.4
2,862,513	+		PP_2515	0.60	-0.2
2,862,682	-		PP_2515	0.82	+1.1
2,862,876	+				+0.0
2,862,895	+				-0.4
2,862,904	-				+0.5
2,862,940	+				+0.5
2,863,229	+		PP_2516	0.24	+0.7
2,863,230	-		PP_2516	0.24	+2.2
2,863,566	+		PP_2516	0.52	+0.8
2,863,567	-		PP_2516	0.52	+1.2
2,863,567	-		PP_2516	0.52	+0.0
2,863,691	+		PP_2516	0.63	+1.5
2,863,929	+		PP_2516	0.83	-0.3
2,863,929	+		PP_2516	0.83	-0.3
2,863,929	+		PP_2516	0.83	+0.1
2,863,979	+		PP_2516	0.87	+0.4
2,863,980	-		PP_2516	0.87	+1.0
2,864,104	+				+0.5
2,864,151	+				+2.6
2,864,156	+				+0.2
2,864,283	+		PP_2517	0.11	+0.3
2,864,283	+		PP_2517	0.11	+0.5
2,864,284	-		PP_2517	0.11	+0.2
2,864,331	+		PP_2517	0.15	-0.9
2,864,331	+		PP_2517	0.15	+1.7
2,864,331	+		PP_2517	0.15	-0.1
2,864,343	+		PP_2517	0.16	+0.3
2,864,529	+		PP_2517	0.31	+0.6
2,864,529	+		PP_2517	0.31	-2.6
2,864,530	-		PP_2517	0.31	-0.1
2,864,628	+		PP_2517	0.39	+0.8
2,864,700	+		PP_2517	0.45	+0.7
2,864,701	-		PP_2517	0.45	-0.9
2,864,701	-		PP_2517	0.45	+0.8
2,864,722	-		PP_2517	0.46	-0.4
2,864,874	+		PP_2517	0.59	-0.0
2,864,875	-		PP_2517	0.59	-1.0
2,864,875	-		PP_2517	0.59	-0.2
2,865,126	+		PP_2517	0.79	-0.8
2,865,126	+		PP_2517	0.79	+1.0
2,865,127	-		PP_2517	0.79	+0.2
2,865,127	-		PP_2517	0.79	-0.5
2,865,127	-		PP_2517	0.79	-0.9