Strain Fitness in Pseudomonas putida KT2440 around PP_2420

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
2,765,724	+		PP_2419	0.40	-0.8
2,765,724	+		PP_2419	0.40	-0.4
2,765,725	-		PP_2419	0.40	+1.1
2,765,817	+		PP_2419	0.48	+0.5
2,766,043	-		PP_2419	0.68	+0.7
2,766,043	-		PP_2419	0.68	+0.5
2,766,171	+		PP_2419	0.79	-0.5
2,766,171	+		PP_2419	0.79	-0.4
2,766,171	+		PP_2419	0.79	-1.0
2,766,458	-				-0.0
2,766,544	-				-0.4
2,766,611	+				-0.7
2,766,611	+				-1.1
2,766,611	+				-1.4
2,766,612	-				-1.0
2,766,612	-				+1.2
2,766,612	-				+2.3
2,766,612	-				+0.1
2,766,615	+				-0.5
2,766,615	+				-0.9
2,766,739	-				-1.1
2,766,739	-				-1.0
2,766,753	+		PP_2420	0.10	+0.1
2,766,753	+		PP_2420	0.10	-0.3
2,766,754	-		PP_2420	0.10	+0.4
2,766,817	+		PP_2420	0.13	+0.7
2,766,818	-		PP_2420	0.13	+0.9
2,766,895	-		PP_2420	0.17	-0.0
2,766,906	-		PP_2420	0.17	+1.1
2,767,138	-		PP_2420	0.28	+0.1
2,767,206	+		PP_2420	0.31	+0.9
2,767,206	+		PP_2420	0.31	+0.5
2,767,233	+		PP_2420	0.32	+1.1
2,767,233	+		PP_2420	0.32	-0.5
2,767,234	-		PP_2420	0.32	-0.1
2,767,331	+		PP_2420	0.36	+0.4
2,767,332	-		PP_2420	0.37	-1.5
2,767,396	+		PP_2420	0.39	+0.3
2,767,396	+		PP_2420	0.39	-0.0
2,767,396	+		PP_2420	0.39	-0.1
2,767,396	+		PP_2420	0.39	+0.4
2,767,396	+		PP_2420	0.39	-0.6
2,767,396	+		PP_2420	0.39	+0.3
2,767,397	-		PP_2420	0.40	-0.4
2,767,397	-		PP_2420	0.40	+0.1
2,767,498	-		PP_2420	0.44	-0.1
2,767,498	-		PP_2420	0.44	-1.9
2,767,498	-		PP_2420	0.44	-0.5
2,767,536	+		PP_2420	0.46	+0.5
2,767,537	-		PP_2420	0.46	+1.0
2,767,571	+		PP_2420	0.47	+1.9
2,767,642	-		PP_2420	0.51	+0.5
2,767,642	-		PP_2420	0.51	+0.5
2,767,683	+		PP_2420	0.53	-0.9
2,767,722	+		PP_2420	0.54	-0.4
2,767,723	-		PP_2420	0.54	-1.1
2,767,723	-		PP_2420	0.54	+0.8
2,767,723	-		PP_2420	0.54	-0.0
2,767,725	+		PP_2420	0.55	-0.4
2,767,725	+		PP_2420	0.55	+0.4
2,767,725	+		PP_2420	0.55	+0.8
2,767,725	+		PP_2420	0.55	+0.3
2,767,726	-		PP_2420	0.55	+0.2
2,767,726	-		PP_2420	0.55	+1.1
2,767,726	-		PP_2420	0.55	-0.6
2,767,726	-		PP_2420	0.55	-0.3
2,767,726	-		PP_2420	0.55	-0.8
2,767,726	-		PP_2420	0.55	-1.7
2,767,797	+		PP_2420	0.58	+0.3
2,767,798	-		PP_2420	0.58	+0.7
2,767,824	+		PP_2420	0.59	+1.0
2,767,825	-				+3.5
2,767,825	-		PP_2420	0.59	+0.3
2,767,851	+		PP_2420	0.60	+0.6
2,767,878	+		PP_2420	0.61	+0.0
2,767,878	+		PP_2420	0.61	-0.1
2,767,878	+		PP_2420	0.61	+1.2
2,767,878	+		PP_2420	0.61	-0.0
2,767,879	-		PP_2420	0.62	+0.6
2,767,879	-		PP_2420	0.62	+0.1
2,767,879	-		PP_2420	0.62	+1.4
2,767,881	+		PP_2420	0.62	+0.3
2,767,881	+		PP_2420	0.62	-1.5
2,767,881	+		PP_2420	0.62	-0.2
2,767,882	-		PP_2420	0.62	+0.8
2,767,975	+		PP_2420	0.66	+0.8
2,767,976	-		PP_2420	0.66	+0.6
2,768,274	+		PP_2420	0.80	-0.5
2,768,275	-		PP_2420	0.80	+0.4
2,768,651	-				+0.5
2,768,848	+				+0.8
2,768,848	+				-0.4
2,769,134	+				+0.6
2,769,230	+		PP_2421	0.18	-0.6
2,769,230	+		PP_2421	0.18	-0.2
2,769,230	+		PP_2421	0.18	+0.9
2,769,230	+		PP_2421	0.18	+0.0
2,769,230	+		PP_2421	0.18	+0.3
2,769,230	+		PP_2421	0.18	+0.2
2,769,230	+		PP_2421	0.18	-0.5
2,769,230	+		PP_2421	0.18	+0.6
2,769,231	-		PP_2421	0.18	-0.6
2,769,458	+		PP_2421	0.59	+0.1
2,769,459	-		PP_2421	0.59	+1.7
2,769,512	+		PP_2421	0.69	+0.0
2,769,512	+		PP_2421	0.69	-0.2
2,769,513	-		PP_2421	0.69	-0.3
2,769,513	-		PP_2421	0.69	-0.0
2,769,513	-		PP_2421	0.69	+1.9
2,769,618	-		PP_2421	0.88	+0.1