Strain Fitness in Pseudomonas putida KT2440 around PP_2309

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
2,637,822	+				+0.7
2,637,853	+				+0.9
2,637,854	-				-0.7
2,638,009	+		PP_2308	0.14	+0.2
2,638,009	+		PP_2308	0.14	-0.7
2,638,009	+		PP_2308	0.14	-0.8
2,638,010	-		PP_2308	0.14	-0.2
2,638,010	-		PP_2308	0.14	+0.3
2,638,010	-		PP_2308	0.14	+0.7
2,638,010	-		PP_2308	0.14	-1.1
2,638,292	-		PP_2308	0.50	-2.0
2,638,293	+		PP_2308	0.50	+0.6
2,638,293	+		PP_2308	0.50	+0.3
2,638,294	-		PP_2308	0.50	-0.4
2,638,509	+		PP_2308	0.77	-0.8
2,638,510	-		PP_2308	0.77	+0.0
2,638,510	-		PP_2308	0.77	-0.2
2,638,825	-		PP_2309	0.25	-1.1
2,639,179	+				-1.7
2,639,180	-				+0.6
2,639,181	+				-2.2
2,639,181	+				+0.2
2,639,181	+				-1.8
2,639,181	+				-0.7
2,639,181	+				+0.2
2,639,181	+				-0.3
2,639,181	+				-1.5
2,639,182	-				-0.8
2,639,182	-				-2.1
2,639,182	-				-1.1
2,639,326	-		PP_2310	0.10	-0.1
2,639,455	+		PP_2310	0.19	+0.4
2,639,456	-		PP_2310	0.19	-0.9
2,639,456	-		PP_2310	0.19	-0.7
2,639,599	-		PP_2310	0.28	-1.3
2,639,663	+		PP_2310	0.33	-1.3
2,639,664	-		PP_2310	0.33	-1.2
2,639,664	-		PP_2310	0.33	+0.5
2,639,664	-		PP_2310	0.33	-0.2
2,639,712	+		PP_2310	0.36	+1.3
2,639,788	-		PP_2310	0.41	-0.8
2,639,943	+		PP_2310	0.52	+0.4
2,640,029	-		PP_2310	0.58	-1.3
2,640,088	-		PP_2310	0.62	+0.3