Strain Fitness in Pseudomonas putida KT2440 around PP_2291

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
2,617,257	+		PP_2288	0.87	+0.9
2,617,258	-		PP_2288	0.87	+1.4
2,617,258	-		PP_2288	0.87	+0.4
2,617,265	+		PP_2288	0.87	+0.8
2,617,265	+		PP_2288	0.87	-3.1
2,617,266	-		PP_2288	0.87	-0.9
2,617,266	-		PP_2288	0.87	+0.6
2,617,301	+				+1.9
2,617,301	+		PP_2288	0.89	+0.9
2,617,301	+		PP_2288	0.89	-0.4
2,617,302	-		PP_2288	0.89	+0.2
2,617,302	-		PP_2288	0.89	-0.2
2,617,328	+				+0.4
2,617,328	+				-1.5
2,617,328	+				-0.5
2,617,329	-				+1.3
2,617,329	-				-0.8
2,617,364	+				-0.2
2,617,364	+				+0.5
2,617,365	-				-1.7
2,617,367	+				-0.3
2,617,376	+				-1.4
2,617,376	+				-0.2
2,617,377	-				+0.4
2,617,377	-				-0.7
2,617,382	+				+0.4
2,617,382	+				+1.6
2,617,428	-				+0.3
2,617,442	+				+1.5
2,617,443	-				+0.4
2,617,443	-				-0.1
2,617,456	+				+0.7
2,617,457	-				-0.6
2,617,457	-				+2.1
2,617,457	-				+0.2
2,617,457	-				-0.2
2,617,467	+				-1.9
2,617,467	+				-0.6
2,617,473	-				+1.4
2,617,473	-				+0.3
2,617,482	+				+1.8
2,617,514	-				+0.4
2,617,514	-				-0.5
2,617,514	-				-0.3
2,617,514	-				-1.2
2,617,514	-				+0.8
2,617,633	+		PP_2289	0.32	-0.7
2,617,646	+		PP_2289	0.34	-0.2
2,617,646	+		PP_2289	0.34	+0.3
2,617,647	-		PP_2289	0.34	-0.5
2,617,662	-		PP_2289	0.37	-0.6
2,617,779	+		PP_2289	0.61	+0.9
2,617,779	+		PP_2289	0.61	-0.5
2,617,780	-		PP_2289	0.61	+1.1
2,617,783	-		PP_2289	0.61	-0.7
2,617,783	-		PP_2289	0.61	+0.2
2,617,783	-		PP_2289	0.61	+0.9
2,617,783	-		PP_2289	0.61	+0.1
2,617,787	-		PP_2289	0.62	+0.7
2,617,865	+		PP_2289	0.78	+0.7
2,617,866	-		PP_2289	0.78	+0.4
2,617,975	+				+0.3
2,617,976	-				+0.9
2,617,976	-				-0.2
2,618,184	+		PP_2290	0.68	-0.9
2,618,185	-		PP_2290	0.68	-0.1
2,618,185	-		PP_2290	0.68	+0.5
2,618,188	+		PP_2290	0.69	-1.3
2,618,189	-		PP_2290	0.70	+0.6
2,618,189	-		PP_2290	0.70	+0.2
2,618,189	-		PP_2290	0.70	+1.0
2,618,208	-		PP_2290	0.78	+1.7
2,618,259	-				+0.5
2,618,284	+		PP_2291	0.13	-1.0
2,618,377	+		PP_2291	0.45	-1.4
2,618,377	+		PP_2291	0.45	-1.1
2,618,497	+		PP_2291	0.87	-0.1
2,618,538	-				-1.1
2,618,578	-				+0.3
2,618,602	+				+0.9
2,618,705	+		PP_2292	0.21	-0.2
2,618,705	+		PP_2292	0.21	+0.8
2,618,705	+		PP_2292	0.21	-0.8
2,618,706	-		PP_2292	0.21	-0.9
2,618,808	-		PP_2292	0.35	+0.6
2,618,969	+		PP_2292	0.55	+0.0
2,618,970	-		PP_2292	0.56	+0.0
2,618,970	-		PP_2292	0.56	+0.1
2,618,983	+		PP_2292	0.57	+0.2
2,618,984	-		PP_2292	0.57	+1.3
2,619,075	-		PP_2292	0.69	+0.5
2,619,075	-		PP_2292	0.69	-0.5
2,619,140	+		PP_2292	0.78	+0.4
2,619,140	+		PP_2292	0.78	+0.3
2,619,202	+		PP_2292	0.86	-0.9
2,619,332	-				+0.3
2,619,341	-				-0.1
2,619,370	+				+0.1
2,619,516	-				+0.2
2,619,523	-				-0.8