Strain Fitness in Pseudomonas putida KT2440 around PP_2191

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
2,495,222	-		PP_2188	0.70	-0.5
2,495,222	-		PP_2188	0.70	-1.0
2,495,284	+		PP_2188	0.80	+0.4
2,495,284	+		PP_2188	0.80	-0.4
2,495,284	+		PP_2188	0.80	+1.1
2,495,324	+		PP_2188	0.86	+0.7
2,495,434	-				-0.2
2,495,450	+				-0.9
2,495,451	-				-0.2
2,495,517	+		PP_2189	0.20	+0.9
2,495,518	-		PP_2189	0.20	-0.2
2,495,675	+		PP_2189	0.57	-1.1
2,495,676	-		PP_2189	0.57	-0.0
2,495,676	-		PP_2189	0.57	-0.0
2,495,843	+				-0.6
2,495,843	+				-0.6
2,495,844	-				-1.4
2,495,844	-				-0.3
2,495,844	-				-0.3
2,495,848	+				+0.4
2,495,873	+				+0.6
2,495,874	-				+0.7
2,495,874	-				+1.1
2,496,081	+		PP_2190	0.76	+1.4
2,496,168	+				-0.0
2,496,168	+				+0.1
2,496,168	+				-0.6
2,496,169	-				+1.5
2,496,169	-				-0.3
2,496,255	+		PP_2191	0.19	-1.0
2,496,255	+		PP_2191	0.19	-0.4
2,496,255	+		PP_2191	0.19	+0.8
2,496,256	-		PP_2191	0.19	-0.3
2,496,256	-		PP_2191	0.19	-0.5
2,496,367	+		PP_2191	0.42	-0.2
2,496,367	+		PP_2191	0.42	+0.4
2,496,367	+		PP_2191	0.42	+0.8
2,496,368	-		PP_2191	0.42	+0.3
2,496,368	-		PP_2191	0.42	-0.6
2,496,441	+		PP_2191	0.58	+0.0
2,496,627	+				-0.9
2,496,629	+				+1.7
2,496,630	-				+0.4
2,496,813	-				+0.8
2,496,823	+				-0.5
2,496,824	-				-1.0
2,496,824	-				+0.1
2,496,899	-		PP_2192	0.11	+0.5
2,497,237	+		PP_2192	0.41	+3.0
2,497,238	-		PP_2192	0.41	-0.3
2,497,238	-		PP_2192	0.41	+0.1
2,497,238	-		PP_2192	0.41	-0.0
2,497,240	-		PP_2192	0.41	-0.0
2,497,360	+		PP_2192	0.52	+1.1
2,497,393	-		PP_2192	0.55	+0.8
2,497,475	+		PP_2192	0.62	-1.0
2,497,476	-		PP_2192	0.62	+0.2