Strain Fitness in Pseudomonas putida KT2440 around PP_2124

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
2,421,970	+		PP_2123	0.21	+0.5
2,421,971	-		PP_2123	0.21	-0.8
2,422,087	-		PP_2123	0.30	+0.5
2,422,140	+		PP_2123	0.35	-1.5
2,422,140	+		PP_2123	0.35	+0.1
2,422,140	+		PP_2123	0.35	+0.6
2,422,141	-		PP_2123	0.35	+0.1
2,422,141	-		PP_2123	0.35	+0.5
2,422,337	+		PP_2123	0.51	+1.0
2,422,337	+		PP_2123	0.51	+1.4
2,422,337	+		PP_2123	0.51	+0.2
2,422,337	+		PP_2123	0.51	+0.1
2,422,337	+		PP_2123	0.51	-1.6
2,422,337	+		PP_2123	0.51	-0.5
2,422,338	-		PP_2123	0.51	-1.0
2,422,338	-		PP_2123	0.51	-0.7
2,422,461	+		PP_2123	0.61	+0.8
2,422,462	-		PP_2123	0.61	-0.8
2,422,508	+		PP_2123	0.65	-0.2
2,422,508	+		PP_2123	0.65	+0.1
2,422,673	+		PP_2123	0.78	-0.0
2,422,769	+		PP_2123	0.86	-0.1
2,422,770	-		PP_2123	0.86	-0.7
2,422,808	+		PP_2123	0.89	-2.2
2,422,809	-		PP_2123	0.89	+1.0
2,422,809	-		PP_2123	0.89	-1.0
2,422,929	+				+1.2
2,423,000	+				-1.0
2,423,000	+				-1.5
2,423,000	+				-0.6
2,423,001	-				+0.4
2,423,001	-				-1.0
2,423,001	-				+0.2
2,423,001	-				+1.0
2,423,158	+				-0.6
2,423,158	-		PP_2124	0.18	+1.4
2,423,266	-		PP_2124	0.27	+0.7
2,423,541	+		PP_2124	0.49	+0.9
2,423,542	-		PP_2124	0.49	+0.8
2,423,826	+		PP_2124	0.72	-0.6
2,423,827	-		PP_2124	0.72	+0.7
2,423,928	+		PP_2124	0.80	+0.4
2,423,985	-		PP_2124	0.85	-0.6
2,424,068	-				+1.0
2,424,108	+				+1.8
2,424,109	-				+0.9
2,424,109	-				+0.8
2,424,150	+				-0.7
2,424,151	-				-1.0
2,424,151	-				+0.3
2,424,151	-				-2.3
2,424,205	+				-1.9
2,424,205	+				+1.3
2,424,206	-				-0.2
2,424,270	+				-0.2
2,424,271	-				+0.4
2,424,271	-				+0.7
2,424,283	+				-1.6
2,424,400	+				-0.6
2,424,401	-				-2.5
2,424,538	+		PP_2125	0.16	+0.4
2,424,539	-		PP_2125	0.16	-0.4
2,424,539	-		PP_2125	0.16	+1.2
2,424,600	+		PP_2125	0.23	-0.3
2,424,866	+		PP_2125	0.51	+1.8
2,424,867	-		PP_2125	0.51	-0.6
2,424,867	-		PP_2125	0.51	+0.4
2,424,906	+		PP_2125	0.55	-1.1
2,424,941	-		PP_2125	0.59	-1.5
2,424,955	+		PP_2125	0.61	-0.0
2,424,956	-		PP_2125	0.61	+1.2
2,424,961	+		PP_2125	0.61	-0.7
2,424,961	+		PP_2125	0.61	+0.2
2,425,088	+		PP_2125	0.75	+0.3