Strain Fitness in Pseudomonas putida KT2440 around PP_2003

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
2,271,171	+				-0.2
2,271,171	+				-1.5
2,271,171	+				+0.4
2,271,171	+				+0.8
2,271,171	+				-0.2
2,271,171	+				-1.4
2,271,171	+				+1.1
2,271,171	+				-0.4
2,271,172	-				-0.1
2,271,172	-				+1.2
2,271,172	-				-0.8
2,271,172	-				+0.5
2,271,172	-				-0.4
2,271,172	-				-1.0
2,271,172	-				+0.9
2,271,172	-				-1.6
2,271,173	+				+2.6
2,271,173	+				+1.7
2,271,174	-				-0.3
2,271,227	+				-1.3
2,271,228	-				-0.5
2,271,236	+				-0.1
2,271,249	+				-0.7
2,271,249	+				-1.5
2,271,250	-				+0.3
2,271,724	-		PP_t33	0.10	-0.0
2,271,811	+				-0.2
2,271,812	-				-1.3
2,271,812	-				-1.8
2,271,896	-				+0.2
2,271,896	-				+0.3
2,271,942	-		PP_t34	0.10	+1.1
2,272,179	+				+0.6
2,272,180	-				-0.8
2,272,180	-				-0.5
2,272,180	-				+0.5
2,272,328	-		PP_2003	0.25	+0.0
2,272,403	+		PP_2003	0.33	-0.4
2,272,403	+		PP_2003	0.33	+0.1
2,272,404	-		PP_2003	0.33	+0.9
2,272,694	+		PP_2003	0.64	-0.0
2,272,703	+		PP_2003	0.65	-0.1
2,272,704	-		PP_2003	0.65	-1.5
2,272,724	+		PP_2003	0.67	+1.2
2,272,724	+		PP_2003	0.67	-0.3
2,272,725	-		PP_2003	0.67	+0.6
2,272,725	-		PP_2003	0.67	-0.1
2,273,093	+				+0.2
2,273,094	-				+1.2
2,273,107	+				+0.9
2,273,107	+				+0.1
2,273,108	-				-0.9
2,273,108	-				+0.7
2,273,142	+				-0.5
2,273,149	-				+1.2
2,273,157	+				-0.6
2,273,157	+				-0.2
2,273,157	+				+0.5
2,273,157	+				-0.9
2,273,157	+				-1.7
2,273,157	+				-0.5
2,273,157	+				+0.2
2,273,158	-				+0.7
2,273,158	-				+1.3
2,273,158	-				-1.0
2,273,158	-				+0.7
2,273,190	+				-0.8
2,273,190	+				-1.3
2,273,208	+				-0.1
2,273,208	+				+1.2
2,273,208	+				-0.2
2,273,209	-				+0.8
2,273,209	-				-0.6
2,273,209	-				+0.8
2,273,209	-				+0.4
2,273,209	-				+0.1
2,273,253	-				-1.2
2,273,265	+				-0.0
2,273,265	+				-1.3
2,273,282	+				+0.8
2,273,328	-				+0.4
2,273,429	+				-0.5
2,273,429	+				+0.6
2,273,429	+				+1.0
2,273,429	+				-0.7
2,273,430	-		PP_2004	0.10	+0.1
2,273,430	-		PP_2004	0.10	-3.0
2,273,430	-		PP_2004	0.10	+0.5
2,273,430	-		PP_2004	0.10	+1.0
2,273,430	-		PP_2004	0.10	-0.2
2,273,434	+		PP_2004	0.10	+0.5
2,273,435	-		PP_2004	0.10	-0.7
2,273,435	-		PP_2004	0.10	+0.5
2,273,468	+		PP_2004	0.14	+0.8
2,273,468	+		PP_2004	0.14	+2.4
2,273,468	+		PP_2004	0.14	+0.3
2,273,469	-		PP_2004	0.14	+0.6
2,273,469	-		PP_2004	0.14	-0.2
2,273,469	-		PP_2004	0.14	+0.0
2,273,560	+		PP_2004	0.22	-1.2
2,273,560	+		PP_2004	0.22	-0.1
2,273,561	-		PP_2004	0.23	+0.8
2,273,816	+		PP_2004	0.47	-0.0
2,273,828	+		PP_2004	0.48	-0.3
2,273,828	+		PP_2004	0.48	+0.2
2,273,828	+		PP_2004	0.48	+0.3
2,273,829	-				+0.4
2,273,942	+		PP_2004	0.59	+0.7
2,273,951	+		PP_2004	0.60	+0.3
2,273,951	+		PP_2004	0.60	+0.8
2,273,951	+		PP_2004	0.60	-0.2
2,273,966	+		PP_2004	0.61	-0.5
2,273,966	+		PP_2004	0.61	+0.9
2,273,966	+		PP_2004	0.61	-0.5