Experiment: 1-Pentanol 0.3 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1900 and PP_1901 are separated by 44 nucleotides PP_1901 and PP_1902 overlap by 4 nucleotides PP_1902 and PP_1903 overlap by 1 nucleotides PP_1903 and PP_1904 overlap by 40 nucleotides
PP_1900: PP_1900 - Tetraacyldisaccharide 4'-kinase, at 2,143,652 to 2,144,656
_1900
PP_1901: PP_1901 - conserved protein of unknown function, UPF0434 family, at 2,144,701 to 2,144,886
_1901
PP_1902: PP_1902 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 2,144,883 to 2,145,647
_1902
PP_1903: PP_1903 - putative phosphotyrosine-protein phosphatase, at 2,145,647 to 2,146,111
_1903
PP_1904: PP_1904 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 2,146,072 to 2,147,127
_1904
Position (kb)
2145
2146
2147 Strain fitness (log2 ratio)
-2
-1
0
1 at 2144.686 kb on + strand at 2145.887 kb on + strand, within PP_1903 at 2146.019 kb on + strand, within PP_1903 at 2146.022 kb on + strand, within PP_1903 at 2146.022 kb on + strand, within PP_1903 at 2146.022 kb on + strand, within PP_1903 at 2146.107 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol% remove 2,144,686 + +1.1 2,145,887 + PP_1903 0.52 +0.5 2,146,019 + PP_1903 0.80 -0.8 2,146,022 + PP_1903 0.81 -0.5 2,146,022 + PP_1903 0.81 -0.6 2,146,022 + PP_1903 0.81 -2.0 2,146,107 + +0.9
Or see this region's nucleotide sequence