Strain Fitness in Pseudomonas putida KT2440 around PP_1836

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
2,058,854	-		PP_1834	0.77	+0.7
2,059,133	-		PP_1835	0.18	+1.0
2,059,177	+		PP_1835	0.27	-2.2
2,059,177	+		PP_1835	0.27	-1.1
2,059,178	-		PP_1835	0.27	-1.0
2,059,179	-		PP_1835	0.27	+1.0
2,059,262	-		PP_1835	0.43	-0.4
2,059,262	-		PP_1835	0.43	+0.7
2,059,262	-		PP_1835	0.43	-1.0
2,059,262	-		PP_1835	0.43	-0.5
2,059,262	-		PP_1835	0.43	+0.8
2,059,315	-		PP_1835	0.53	-1.3
2,059,368	+		PP_1835	0.63	+0.7
2,059,369	-		PP_1835	0.63	+0.5
2,059,411	+		PP_1835	0.71	-0.6
2,059,411	+		PP_1835	0.71	+0.7
2,059,411	+		PP_1835	0.71	+0.2
2,059,411	+		PP_1835	0.71	-0.2
2,059,412	-		PP_1835	0.71	-0.3
2,059,412	-		PP_1835	0.71	-0.5
2,059,412	-		PP_1835	0.71	+1.0
2,059,412	-		PP_1835	0.71	-1.0
2,059,412	-		PP_1835	0.71	-0.5
2,059,491	-		PP_1835	0.86	+0.4
2,059,567	+				-0.8
2,059,610	-				-0.9
2,059,634	+				-1.3
2,059,895	-		PP_1836	0.22	-0.2
2,060,238	+		PP_1836	0.58	-0.1
2,060,238	+		PP_1836	0.58	-1.4
2,060,506	+		PP_1836	0.87	-1.2
2,060,506	+		PP_1836	0.87	-0.8
2,060,661	-				-0.4
2,060,698	+				+1.1
2,060,698	+				+0.5
2,060,699	-				+0.4
2,060,710	-				-0.9
2,060,717	+				+0.1
2,060,718	-				+0.3
2,060,718	-				-0.1
2,060,718	-				+1.2
2,060,718	-				-0.3
2,060,718	-				+0.6
2,060,718	-				+1.0
2,060,763	+				+0.6
2,060,763	+				-0.5
2,060,764	-				-0.8
2,060,764	-				-1.9
2,060,806	-		PP_1837	0.27	+0.2
2,060,945	-				+1.7
2,060,945	-				-0.6
2,060,961	+				-0.1
2,060,961	+				-0.8
2,060,962	-				+0.5
2,060,962	-				-1.6
2,060,968	+				-0.8
2,060,968	+				-1.5
2,060,969	-				-1.6
2,061,023	-				+1.5
2,061,023	-				+1.2
2,061,023	-				+0.3
2,061,070	+				-0.1
2,061,070	+				-0.5
2,061,071	-				+0.2
2,061,091	+				+2.6
2,061,161	+				-1.4
2,061,162	-				-0.5
2,061,227	+				+1.3
2,061,228	-				+0.2
2,061,317	+		PP_1838	0.11	+0.2
2,061,317	+		PP_1838	0.11	-0.6
2,061,317	+		PP_1838	0.11	+0.0
2,061,317	+		PP_1838	0.11	-0.5
2,061,318	-		PP_1838	0.11	+0.2
2,061,318	-		PP_1838	0.11	-0.8
2,061,318	-		PP_1838	0.11	-0.9
2,061,318	-		PP_1838	0.11	+1.0
2,061,488	+		PP_1838	0.20	+0.7
2,061,488	+		PP_1838	0.20	-0.2
2,061,489	-		PP_1838	0.20	-0.1
2,061,489	-		PP_1838	0.20	-1.6
2,061,575	-		PP_1838	0.24	+1.2