Strain Fitness in Pseudomonas putida KT2440 around PP_1739

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
1,938,281	-		PP_1738	0.40	-1.2
1,938,299	-		PP_1738	0.42	-0.6
1,938,328	+		PP_1738	0.44	+0.0
1,938,329	-		PP_1738	0.44	-1.1
1,938,400	+		PP_1738	0.49	-0.6
1,938,400	+		PP_1738	0.49	-0.0
1,938,401	-		PP_1738	0.50	-0.2
1,938,401	-		PP_1738	0.50	-0.3
1,938,401	-		PP_1738	0.50	-1.7
1,938,517	+		PP_1738	0.59	+1.5
1,938,518	-		PP_1738	0.59	-0.3
1,938,518	-		PP_1738	0.59	-1.6
1,938,574	+		PP_1738	0.63	-0.2
1,938,575	-		PP_1738	0.63	+1.0
1,938,643	+		PP_1738	0.68	-1.1
1,938,644	-		PP_1738	0.68	+2.0
1,938,644	-		PP_1738	0.68	+0.4
1,938,644	-		PP_1738	0.68	-0.4
1,938,689	-		PP_1738	0.72	-0.1
1,938,689	-		PP_1738	0.72	-0.1
1,938,707	-		PP_1738	0.73	-0.8
1,938,793	+		PP_1738	0.80	-0.2
1,938,793	+		PP_1738	0.80	+0.0
1,938,866	-		PP_1738	0.85	-0.7
1,938,953	+				-0.6
1,938,954	-				+0.0
1,938,954	-				+0.4
1,938,967	+				-0.4
1,938,967	+				+0.0
1,938,967	+				+0.5
1,938,968	-				+0.3
1,938,968	-				-0.8
1,938,968	-				+0.2
1,939,057	+				-0.7
1,939,057	+				+0.5
1,939,057	+				-0.2
1,939,057	+				-0.3
1,939,057	+				+0.2
1,939,057	+				-0.4
1,939,058	-				-0.6
1,939,058	-				-0.9
1,939,098	-				+1.3
1,939,154	+				-1.4
1,939,155	-				-0.0
1,939,155	-				-0.4
1,939,165	+				+0.9
1,939,165	+				-1.1
1,939,166	-				+0.8
1,939,166	-				+0.3
1,939,166	-				-0.8
1,939,166	-				-0.1
1,939,191	-				-1.8
1,939,203	-				-1.3
1,939,203	-				-1.6
1,939,310	-		PP_1739	0.20	-0.5
1,939,540	+		PP_1739	0.81	-0.4
1,939,540	+		PP_1739	0.81	-0.6
1,939,609	+				-0.7
1,939,609	+				+0.2
1,939,609	+				-0.3
1,939,610	-				+0.1
1,939,610	-				-1.0
1,939,610	-				+0.9
1,939,610	-				-0.1
1,939,690	+				-1.3
1,939,691	-				-0.6
1,939,697	+				-0.4
1,939,698	-				-0.2
1,939,698	-				-0.7
1,939,884	-		PP_1740	0.12	+1.1
1,939,928	+		PP_1740	0.15	+0.0
1,940,078	-		PP_1740	0.24	-0.4
1,940,351	+		PP_1740	0.41	-1.7
1,940,351	+		PP_1740	0.41	-1.9
1,940,351	+		PP_1740	0.41	+1.4
1,940,352	-		PP_1740	0.41	-1.7
1,940,352	-		PP_1740	0.41	-0.0
1,940,352	-		PP_1740	0.41	-0.5
1,940,352	-		PP_1740	0.41	+1.4
1,940,352	-		PP_1740	0.41	+0.3
1,940,354	-		PP_1740	0.42	+0.2
1,940,364	-		PP_1740	0.42	+0.5
1,940,426	+		PP_1740	0.46	-0.0
1,940,426	+		PP_1740	0.46	-0.3
1,940,426	+		PP_1740	0.46	-1.2
1,940,427	-		PP_1740	0.46	+0.1
1,940,427	-		PP_1740	0.46	+0.8
1,940,427	-		PP_1740	0.46	-0.2
1,940,551	+				+0.0
1,940,551	+		PP_1740	0.54	-0.1
1,940,551	+		PP_1740	0.54	+0.0
1,940,551	+		PP_1740	0.54	+0.1
1,940,552	-		PP_1740	0.54	-0.8
1,940,552	-		PP_1740	0.54	+0.4
1,940,552	-		PP_1740	0.54	-0.6
1,940,552	-		PP_1740	0.54	+0.1