Strain Fitness in Pseudomonas putida KT2440 around PP_1728

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
1,926,972	+				+1.1
1,926,972	+				-0.6
1,926,973	-				-2.6
1,926,999	-				-0.5
1,926,999	-				-2.5
1,927,028	+				+1.5
1,927,028	+				+1.3
1,927,029	-				-1.0
1,927,029	-				+0.5
1,927,029	-				+0.3
1,927,035	+				+0.9
1,927,035	+				+1.1
1,927,035	+				+1.0
1,927,035	+				+0.6
1,927,036	-				-0.1
1,927,036	-				+0.1
1,927,036	-				+0.2
1,927,036	-				+0.6
1,927,127	+				+0.8
1,927,127	+				-0.8
1,927,128	-				+0.8
1,927,128	-				-0.3
1,927,139	-				+0.1
1,927,170	+				+0.5
1,927,179	+				-0.2
1,927,179	+				-1.0
1,927,179	+				+0.7
1,927,179	+				+0.2
1,927,179	+				+0.4
1,927,180	-				+0.9
1,927,184	-				+0.4
1,927,184	-				-0.7
1,927,424	+		PP_1727	0.32	+1.2
1,927,425	-		PP_1727	0.32	+1.0
1,927,425	-		PP_1727	0.32	+0.8
1,927,425	-		PP_1727	0.32	-0.5
1,927,487	-		PP_1727	0.41	-0.0
1,927,487	-		PP_1727	0.41	+0.5
1,927,614	-		PP_1727	0.59	+0.3
1,927,614	-		PP_1727	0.59	-0.5
1,927,625	+		PP_1727	0.61	-0.3
1,927,640	+		PP_1727	0.63	-0.8
1,927,691	+		PP_1727	0.70	+0.7
1,927,692	-		PP_1727	0.70	+0.2
1,927,704	-		PP_1727	0.72	+0.4
1,927,810	+		PP_1727	0.86	+0.3
1,927,811	-		PP_1727	0.87	-0.4
1,927,862	+				-0.6
1,927,863	-				+0.6
1,927,940	-				-0.1
1,928,168	+		PP_1728	0.11	+4.1
1,928,169	-		PP_1728	0.11	+3.3
1,928,169	-		PP_1728	0.11	+3.4
1,928,293	+		PP_1728	0.16	+2.7
1,928,294	-		PP_1728	0.17	+3.0
1,928,330	+		PP_1728	0.18	+3.8
1,928,330	+		PP_1728	0.18	+3.8
1,928,330	+		PP_1728	0.18	+4.2
1,928,331	-		PP_1728	0.18	+3.9
1,928,331	-		PP_1728	0.18	+1.9
1,928,331	-		PP_1728	0.18	+3.6
1,928,331	-		PP_1728	0.18	+2.4
1,928,416	+		PP_1728	0.22	+4.1
1,928,416	+				+4.4
1,928,416	+		PP_1728	0.22	+2.5
1,928,417	-		PP_1728	0.22	+3.8
1,928,417	-				+4.1
1,928,888	-		PP_1728	0.44	+3.5
1,928,888	-		PP_1728	0.44	+4.0
1,929,101	+		PP_1728	0.54	+4.9
1,929,113	+		PP_1728	0.55	+5.5
1,929,113	+		PP_1728	0.55	+2.5
1,929,113	+		PP_1728	0.55	+3.0
1,929,113	+		PP_1728	0.55	+3.7
1,929,113	+		PP_1728	0.55	+3.6
1,929,114	-		PP_1728	0.55	+4.0
1,929,198	-		PP_1728	0.58	+3.3
1,929,422	+				+2.4
1,929,422	+		PP_1728	0.69	+3.8
1,929,496	+		PP_1728	0.72	+4.4
1,929,497	-		PP_1728	0.72	+3.2
1,929,641	-		PP_1728	0.79	+3.5
1,930,030	-				+3.2
1,930,123	+				+1.2
1,930,123	+				+2.1
1,930,131	+				+3.1
1,930,131	+				+2.5
1,930,131	+				+3.2
1,930,132	-				-1.4
1,930,132	-				+0.3
1,930,177	+		PP_1729	0.23	+2.3
1,930,206	-		PP_1729	0.37	-0.6
1,930,434	+				+0.4
1,930,435	-				-0.6
1,930,435	-				+1.1
1,930,460	+				+2.0
1,930,460	+				+1.0
1,930,460	+				+0.7
1,930,474	+				+1.4
1,930,474	+				-2.1
1,930,475	-				-1.1
1,930,475	-				+0.6
1,930,645	+		PP_1730	0.16	+0.4
1,930,847	+		PP_1730	0.32	+0.4
1,930,848	-		PP_1730	0.32	-0.3
1,931,084	+		PP_1730	0.50	+0.2
1,931,084	+		PP_1730	0.50	-1.0
1,931,085	-		PP_1730	0.50	-1.3