Strain Fitness in Pseudomonas putida KT2440 around PP_1691

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
1,882,552	+				-0.0
1,882,567	+				-1.7
1,882,602	-				-0.9
1,882,624	+				+0.6
1,882,624	+				+0.3
1,882,626	+				+0.4
1,882,627	-				-0.0
1,882,627	-				-0.2
1,882,738	+				-0.8
1,882,738	+				-0.3
1,882,739	-				+0.5
1,882,739	-				+0.4
1,882,739	-				-0.1
1,882,739	-				-1.0
1,882,739	-				-1.5
1,882,806	+		PP_1690	0.20	-0.9
1,882,807	-		PP_1690	0.20	-0.6
1,882,991	+		PP_1690	0.58	-0.5
1,882,992	-		PP_1690	0.58	-0.0
1,883,101	+		PP_1690	0.81	-0.9
1,883,101	+		PP_1690	0.81	-0.4
1,883,162	+				+0.4
1,883,163	-				-0.1
1,883,163	-				+0.4
1,883,163	-				+0.1
1,883,187	+				+0.5
1,883,294	+				-0.5
1,883,295	-				-0.2
1,883,302	+				-1.1
1,883,313	+				-0.0
1,883,356	+				-0.5
1,883,357	-				-0.4
1,883,358	+				-0.7
1,883,359	-				-1.1
1,883,374	+				-0.1
1,883,375	-				+0.8
1,883,504	+		PP_1691	0.27	+0.6
1,883,516	+		PP_1691	0.32	+1.3
1,883,517	-		PP_1691	0.33	-2.2
1,883,562	+		PP_1691	0.53	+0.9
1,883,563	-		PP_1691	0.53	+0.2
1,883,667	+				+1.0
1,883,667	+				-1.0
1,883,667	+				+0.4
1,883,668	-				+0.4
1,883,689	-				+0.3
1,883,701	+				-1.2
1,883,702	-				-1.6
1,883,740	+				+1.6
1,883,743	+				-0.1
1,883,819	+				+0.4
1,883,820	-				+1.0
1,883,820	-				-0.4
1,883,820	-				+0.5
1,883,820	-				+0.6
1,883,861	+				+0.9
1,883,861	+				-0.4
1,883,862	-				-1.5
1,884,033	-				-1.1
1,884,033	-				+0.2
1,884,048	-				+0.1
1,884,076	+				+0.6
1,884,102	+				+0.0
1,884,190	+				+0.3
1,884,191	-				-0.1
1,884,225	+				-0.0
1,884,427	+				+0.7
1,884,427	+				+0.4
1,884,427	+				+0.2
1,884,428	-				-0.3
1,884,428	-				-0.2
1,884,579	+				-0.2
1,884,580	-				-0.8
1,884,601	+				-2.4
1,884,601	+				+0.7