Strain Fitness in Pseudomonas putida KT2440 around PP_1656

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
1,850,014	-		PP_1655	0.41	+1.5
1,850,014	-		PP_1655	0.41	+1.1
1,850,470	-		PP_1655	0.74	+2.6
1,850,470	-		PP_1655	0.74	+2.5
1,850,548	-		PP_1655	0.80	+2.9
1,850,676	-		PP_1655	0.89	+6.0
1,850,676	-		PP_1655	0.89	+6.6
1,850,676	-		PP_1655	0.89	+6.8
1,850,676	-		PP_1655	0.89	+6.0
1,850,676	-		PP_1655	0.89	+6.5
1,850,884	-				+8.3
1,850,884	-				+6.4
1,850,884	-				+6.5
1,850,905	+				+6.5
1,850,906	-				+1.1
1,850,920	-				+8.5
1,850,959	+				+6.0
1,850,960	-				+7.1
1,850,960	-				+5.6
1,850,991	+				+6.4
1,850,991	+				+4.3
1,850,992	-				-0.9
1,851,054	+				+5.6
1,851,054	+				+6.6
1,851,097	+				+7.2
1,851,097	+				+6.6
1,851,097	+				+6.7
1,851,185	+		PP_1656	0.12	+6.8
1,851,186	-				+4.8
1,851,342	+		PP_1656	0.19	+5.2
1,851,343	-		PP_1656	0.19	+1.1
1,851,491	+		PP_1656	0.26	+6.2
1,851,491	+		PP_1656	0.26	+6.6
1,851,491	+		PP_1656	0.26	+6.9
1,851,492	-		PP_1656	0.26	+6.2
1,851,492	-		PP_1656	0.26	+8.8
1,851,578	+		PP_1656	0.30	+1.1
1,851,712	+		PP_1656	0.36	+5.7
1,851,712	+		PP_1656	0.36	+1.1
1,851,712	+		PP_1656	0.36	+6.3
1,851,712	+		PP_1656	0.36	+7.1
1,851,712	+				+1.1
1,851,712	+		PP_1656	0.36	+6.1
1,851,712	+		PP_1656	0.36	+6.7
1,851,712	+		PP_1656	0.36	+8.0
1,851,713	-		PP_1656	0.36	+5.6
1,851,713	-		PP_1656	0.36	+1.1
1,851,713	-		PP_1656	0.36	+1.1
1,851,713	-		PP_1656	0.36	+4.8
1,851,716	+		PP_1656	0.36	+6.3
1,851,716	+		PP_1656	0.36	+7.0
1,851,717	-		PP_1656	0.36	+6.7
1,851,717	-		PP_1656	0.36	+7.4
1,851,717	-				-0.2
1,851,768	-		PP_1656	0.38	+1.1
1,851,815	+		PP_1656	0.40	+9.0
1,851,816	-		PP_1656	0.40	+8.2
1,851,875	+		PP_1656	0.43	+8.0
1,851,876	-		PP_1656	0.43	+5.6
1,851,876	-		PP_1656	0.43	+8.8
1,851,876	-		PP_1656	0.43	+0.1
1,852,000	-		PP_1656	0.48	+1.1
1,852,000	-		PP_1656	0.48	+1.1
1,852,017	-		PP_1656	0.49	+6.4
1,852,163	+		PP_1656	0.56	+6.7
1,852,163	+		PP_1656	0.56	+7.0
1,852,163	+		PP_1656	0.56	+6.3
1,852,163	+		PP_1656	0.56	+6.6
1,852,163	+		PP_1656	0.56	+6.3
1,852,164	-		PP_1656	0.56	+7.5
1,852,302	-		PP_1656	0.62	+5.7
1,852,302	-		PP_1656	0.62	+6.9
1,852,302	-		PP_1656	0.62	+6.2
1,852,388	+		PP_1656	0.66	+6.7
1,852,388	+		PP_1656	0.66	+6.7
1,852,389	-		PP_1656	0.66	+6.8
1,852,389	-		PP_1656	0.66	+6.5
1,852,645	+		PP_1656	0.77	+0.7
1,852,790	+		PP_1656	0.84	+3.3
1,852,790	+		PP_1656	0.84	+3.3
1,852,791	-		PP_1656	0.84	+3.1
1,852,913	+		PP_1656	0.89	+0.6
1,853,146	+				+1.8
1,853,146	+				+1.6
1,853,179	+				+0.2
1,853,224	+				+0.2
1,853,225	-				-0.5
1,853,225	-				+1.0
1,853,225	-				+0.7
1,853,278	+				+0.6
1,853,279	-				-0.7
1,853,279	-				+1.1
1,853,279	-				-0.5
1,853,279	-				-0.5
1,853,285	+				-0.4
1,853,285	+				-0.1
1,853,285	+				+0.1
1,853,286	-				+1.8
1,853,336	+				+0.8
1,853,356	-				-0.2
1,853,366	+		PP_1657	0.10	+0.3
1,853,366	+		PP_1657	0.10	-0.1
1,853,484	-		PP_1657	0.25	+0.8
1,853,487	-		PP_1657	0.25	+0.6
1,853,487	-		PP_1657	0.25	+0.2
1,853,487	-		PP_1657	0.25	+0.7
1,853,597	+		PP_1657	0.38	+0.5
1,853,598	-		PP_1657	0.38	+0.5
1,853,996	-		PP_1657	0.86	-0.4
1,854,122	+				+0.1
1,854,122	+				+0.7
1,854,123	-				+0.1
1,854,123	-				-0.6
1,854,123	-				-0.3
1,854,123	-				-2.1
1,854,123	-				-1.3
1,854,134	+				-0.2
1,854,135	-				-0.9