Strain Fitness in Pseudomonas putida KT2440 around PP_1562

Experiment: 1-Pentanol 0.3 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1559 and PP_1560 are separated by 60 nucleotidesPP_1560 and PP_1561 overlap by 10 nucleotidesPP_1561 and PP_1562 are separated by 127 nucleotidesPP_1562 and PP_1563 are separated by 23 nucleotides PP_1559: PP_1559 - Holin, at 1,755,485 to 1,755,808 _1559 PP_1560: PP_1560 - conserved protein of unknown function, at 1,755,869 to 1,756,051 _1560 PP_1561: PP_1561 - putative Phage holin, at 1,756,042 to 1,756,410 _1561 PP_1562: PP_1562 - putative Phage terminase, small subunit, at 1,756,538 to 1,756,921 _1562 PP_1563: PP_1563 - putative Phage terminase, large subunit, at 1,756,945 to 1,758,630 _1563 Position (kb) 1756 1757Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1755.563 kb on + strand, within PP_1559at 1755.563 kb on + strand, within PP_1559at 1755.563 kb on + strand, within PP_1559at 1755.564 kb on - strand, within PP_1559at 1755.608 kb on + strand, within PP_1559at 1755.608 kb on + strand, within PP_1559at 1755.609 kb on - strand, within PP_1559at 1755.609 kb on - strand, within PP_1559at 1755.664 kb on + strand, within PP_1559at 1755.793 kb on + strandat 1755.793 kb on + strandat 1755.794 kb on - strandat 1755.989 kb on - strand, within PP_1560at 1756.025 kb on + strand, within PP_1560at 1756.026 kb on - strand, within PP_1560at 1756.026 kb on - strand, within PP_1560at 1756.026 kb on - strand, within PP_1560at 1756.111 kb on + strand, within PP_1561at 1756.112 kb on - strand, within PP_1561at 1756.134 kb on - strand, within PP_1561at 1756.167 kb on + strand, within PP_1561at 1756.167 kb on + strand, within PP_1561at 1756.168 kb on - strand, within PP_1561at 1756.234 kb on + strandat 1756.234 kb on + strand, within PP_1561at 1756.234 kb on + strand, within PP_1561at 1756.701 kb on - strand, within PP_1562at 1756.701 kb on - strand, within PP_1562at 1756.919 kb on + strandat 1756.920 kb on - strandat 1756.963 kb on + strandat 1756.964 kb on - strandat 1757.130 kb on + strand, within PP_1563at 1757.131 kb on - strand, within PP_1563at 1757.131 kb on - strand, within PP_1563at 1757.220 kb on + strand, within PP_1563at 1757.221 kb on - strand, within PP_1563at 1757.311 kb on + strand, within PP_1563at 1757.312 kb on - strand, within PP_1563at 1757.312 kb on - strand, within PP_1563at 1757.351 kb on - strand, within PP_1563at 1757.440 kb on + strand, within PP_1563at 1757.440 kb on + strand, within PP_1563at 1757.441 kb on - strand, within PP_1563at 1757.557 kb on + strand, within PP_1563at 1757.558 kb on - strand, within PP_1563at 1757.585 kb on - strand, within PP_1563at 1757.585 kb on - strand, within PP_1563at 1757.658 kb on + strand, within PP_1563at 1757.658 kb on + strand, within PP_1563at 1757.659 kb on - strand, within PP_1563at 1757.659 kb on - strand, within PP_1563at 1757.659 kb on - strand, within PP_1563at 1757.732 kb on + strand, within PP_1563at 1757.733 kb on - strand, within PP_1563at 1757.746 kb on + strand, within PP_1563at 1757.746 kb on + strand, within PP_1563at 1757.747 kb on - strand, within PP_1563

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol%
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1,755,563 + PP_1559 0.24 -0.4
1,755,563 + PP_1559 0.24 +0.5
1,755,563 + PP_1559 0.24 -1.2
1,755,564 - PP_1559 0.24 +0.1
1,755,608 + PP_1559 0.38 -0.7
1,755,608 + PP_1559 0.38 -0.6
1,755,609 - PP_1559 0.38 -0.9
1,755,609 - PP_1559 0.38 +0.7
1,755,664 + PP_1559 0.55 +0.8
1,755,793 + +0.1
1,755,793 + -0.2
1,755,794 - +1.0
1,755,989 - PP_1560 0.66 -1.4
1,756,025 + PP_1560 0.85 +0.4
1,756,026 - PP_1560 0.86 -0.9
1,756,026 - PP_1560 0.86 +0.8
1,756,026 - PP_1560 0.86 -0.0
1,756,111 + PP_1561 0.19 +0.1
1,756,112 - PP_1561 0.19 +0.1
1,756,134 - PP_1561 0.25 +1.2
1,756,167 + PP_1561 0.34 -1.0
1,756,167 + PP_1561 0.34 -1.5
1,756,168 - PP_1561 0.34 -0.4
1,756,234 + +1.1
1,756,234 + PP_1561 0.52 +0.4
1,756,234 + PP_1561 0.52 +0.0
1,756,701 - PP_1562 0.42 +1.5
1,756,701 - PP_1562 0.42 +0.3
1,756,919 + +0.7
1,756,920 - +0.8
1,756,963 + +1.0
1,756,964 - +1.6
1,757,130 + PP_1563 0.11 -0.2
1,757,131 - PP_1563 0.11 -1.1
1,757,131 - PP_1563 0.11 +1.5
1,757,220 + PP_1563 0.16 +0.3
1,757,221 - PP_1563 0.16 +1.8
1,757,311 + PP_1563 0.22 -0.3
1,757,312 - PP_1563 0.22 -0.5
1,757,312 - PP_1563 0.22 -3.2
1,757,351 - PP_1563 0.24 -0.8
1,757,440 + PP_1563 0.29 +0.9
1,757,440 + PP_1563 0.29 -0.6
1,757,441 - PP_1563 0.29 -1.1
1,757,557 + PP_1563 0.36 +0.0
1,757,558 - PP_1563 0.36 -0.3
1,757,585 - PP_1563 0.38 -0.5
1,757,585 - PP_1563 0.38 -0.3
1,757,658 + PP_1563 0.42 -0.2
1,757,658 + PP_1563 0.42 +0.1
1,757,659 - PP_1563 0.42 -0.1
1,757,659 - PP_1563 0.42 +0.1
1,757,659 - PP_1563 0.42 -0.6
1,757,732 + PP_1563 0.47 -0.3
1,757,733 - PP_1563 0.47 -2.4
1,757,746 + PP_1563 0.48 +0.9
1,757,746 + PP_1563 0.48 +0.1
1,757,747 - PP_1563 0.48 -0.9

Or see this region's nucleotide sequence