Strain Fitness in Pseudomonas putida KT2440 around PP_1512

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
1,715,580	+		PP_1510	0.63	+0.7
1,715,581	-		PP_1510	0.63	+0.1
1,715,581	-		PP_1510	0.63	-1.3
1,715,608	-		PP_1510	0.67	+0.3
1,715,790	+		PP_1510	0.88	-0.5
1,715,791	-		PP_1510	0.89	+0.3
1,715,994	+		PP_1511	0.16	+0.9
1,715,994	+		PP_1511	0.16	+0.6
1,715,995	-		PP_1511	0.16	-0.1
1,716,040	-		PP_1511	0.22	-0.4
1,716,144	+		PP_1511	0.38	-0.8
1,716,145	-		PP_1511	0.38	-0.8
1,716,215	+		PP_1511	0.48	-0.8
1,716,320	+		PP_1511	0.63	-1.0
1,716,512	+				+0.7
1,717,023	-		PP_1512	0.72	-1.4
1,717,023	-		PP_1512	0.72	-0.8
1,717,023	-		PP_1512	0.72	-1.1
1,717,091	-		PP_1512	0.83	-1.5
1,717,145	+				+0.6
1,717,146	-				+0.0
1,717,166	+				-2.2
1,717,166	+				-3.0
1,717,167	-				+0.2
1,717,167	-				+0.8
1,717,167	-				-4.2
1,717,188	+				-2.0
1,717,189	-				-0.4
1,717,189	-				-0.3
1,717,189	-				-0.8
1,717,270	-				-2.1
1,717,351	-				-0.9
1,717,351	-				-1.1
1,717,594	+		PP_1513	0.38	+1.0
1,717,825	-		PP_1513	0.67	-1.0
1,717,825	-		PP_1513	0.67	-1.4
1,718,019	-				+0.5
1,718,031	-				+1.2
1,718,044	-				+0.2
1,718,052	+				+0.8
1,718,052	+				+0.0
1,718,053	-				-0.0
1,718,087	+				-0.0
1,718,088	-				-1.5
1,718,110	+				-0.5
1,718,110	+				-0.2
1,718,110	+				+1.2
1,718,111	-				-0.3
1,718,111	-				-0.7
1,718,111	-				-0.4
1,718,111	-				-1.4
1,718,176	+				+0.0
1,718,188	+				+0.2
1,718,188	+				-1.2
1,718,189	-				+1.0
1,718,189	-				-1.5