Strain Fitness in Pseudomonas putida KT2440 around PP_1371

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
1,559,353	-		PP_1370	0.38	+0.4
1,559,353	-		PP_1370	0.38	+0.2
1,559,478	+		PP_1370	0.49	-1.3
1,559,478	+		PP_1370	0.49	-0.6
1,559,478	+		PP_1370	0.49	+0.4
1,559,478	+		PP_1370	0.49	+0.6
1,559,478	+		PP_1370	0.49	+0.7
1,559,478	+		PP_1370	0.49	-0.1
1,559,478	+		PP_1370	0.49	+0.4
1,559,478	+		PP_1370	0.49	-1.3
1,559,479	-		PP_1370	0.49	+0.7
1,559,479	-		PP_1370	0.49	+0.9
1,559,479	-		PP_1370	0.49	+0.9
1,559,479	-		PP_1370	0.49	+0.4
1,559,565	+		PP_1370	0.57	+1.0
1,559,565	+		PP_1370	0.57	+0.2
1,559,617	+		PP_1370	0.62	+0.4
1,559,632	+		PP_1370	0.63	+1.6
1,559,633	-		PP_1370	0.63	-0.3
1,559,701	+		PP_1370	0.69	+0.4
1,559,764	+		PP_1370	0.75	+0.1
1,559,765	-		PP_1370	0.75	+0.2
1,559,810	+		PP_1370	0.79	-0.4
1,559,810	+				+1.2
1,559,810	+		PP_1370	0.79	+0.4
1,559,878	-		PP_1370	0.85	+0.3
1,559,878	-		PP_1370	0.85	+0.8
1,559,884	+		PP_1370	0.85	-0.8
1,559,884	+		PP_1370	0.85	+0.5
1,559,884	+		PP_1370	0.85	+0.0
1,559,884	+		PP_1370	0.85	-0.2
1,559,885	-		PP_1370	0.85	+0.7
1,559,885	-		PP_1370	0.85	+0.6
1,559,937	+				+2.1
1,559,938	-				+1.5
1,559,938	-				-0.3
1,559,938	-				+1.2
1,559,980	+				+1.0
1,559,980	+				+0.1
1,559,981	-				+2.1
1,559,981	-				+0.3
1,559,981	-				+0.7
1,559,981	-				+0.9
1,559,984	+				+0.9
1,559,985	-				-1.7
1,559,985	-				+1.3
1,559,985	-				+0.1
1,559,985	-				+1.2
1,559,985	-				+1.1
1,559,985	-				+0.4
1,559,988	+				+1.2
1,559,988	+				-0.5
1,559,988	+				-0.4
1,559,989	-				+0.3
1,559,989	-				+0.5
1,559,989	-				-0.7
1,559,989	-				+0.0
1,559,989	-				-0.9
1,559,989	-				+1.1
1,559,989	-				+0.4
1,560,107	+				-0.4
1,560,107	+				-2.0
1,560,119	+				-0.1
1,560,119	+				-0.6
1,560,120	-				-0.0
1,560,120	-				+0.1
1,560,120	-				+1.8
1,560,130	+				-0.4
1,560,130	+				-1.1
1,560,131	-				-0.0
1,560,166	+				+1.0
1,560,167	-				-1.4
1,560,207	+				+1.0
1,560,207	+				+1.0
1,561,257	+		PP_1371	0.56	+1.0
1,561,336	+		PP_1371	0.60	+1.5
1,561,337	-		PP_1371	0.60	+0.7
1,561,529	-		PP_1371	0.70	+1.2
1,561,529	-		PP_1371	0.70	+1.5
1,561,666	+		PP_1371	0.77	+0.1
1,561,666	+		PP_1371	0.77	+0.5
1,561,667	-		PP_1371	0.77	+1.0
1,561,712	-		PP_1371	0.80	+1.2
1,561,795	+		PP_1371	0.84	+1.5
1,561,815	+		PP_1371	0.85	+1.0
1,561,815	+		PP_1371	0.85	+0.6
1,561,958	-				+1.8
1,561,986	-				+1.5
1,561,986	-				+0.4
1,561,996	+				+0.1
1,561,996	+				+1.3
1,562,005	+				-0.1
1,562,005	+				+1.1
1,562,031	+				-0.0
1,562,095	+				+2.0
1,562,116	+				-0.5
1,562,116	+				-0.0
1,562,116	+				-0.0
1,562,116	+				-0.4
1,562,117	-				-0.5
1,562,117	-				-1.4
1,562,118	+				+0.1
1,562,118	+				+1.0
1,562,145	+				+0.2
1,562,146	-				-1.5
1,562,146	-				-0.9
1,562,191	+				-0.2
1,562,191	+				+0.9
1,562,191	+				+0.4
1,562,191	+				+0.5
1,562,192	-				-3.5
1,562,194	+				+1.4
1,562,194	+				-0.2
1,562,195	-				-1.0
1,562,204	-				-2.6
1,562,204	-				-2.5
1,562,204	-				-2.3
1,562,217	-				-2.4
1,562,229	-				-2.3
1,562,229	-				-2.2
1,562,229	-				-1.8
1,562,234	-				-0.5
1,562,252	+				+0.8
1,562,671	-		PP_1372	0.28	-0.7
1,562,924	+		PP_1372	0.45	-0.5
1,562,924	+		PP_1372	0.45	+0.4
1,562,925	-		PP_1372	0.45	+0.1
1,562,925	-		PP_1372	0.45	+0.6
1,562,973	+		PP_1372	0.48	+0.9
1,562,973	+		PP_1372	0.48	+0.4
1,562,974	-		PP_1372	0.48	-0.7