Strain Fitness in Pseudomonas putida KT2440 around PP_1342

Experiment: 1-Pentanol 0.3 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1341 and PP_1342 are separated by 55 nucleotidesPP_1342 and PP_1343 are separated by 112 nucleotides PP_1341: PP_1341 - essential cell division protein FtsA, at 1,527,660 to 1,528,922 _1341 PP_1342: PP_1342 - Cell division protein FtsZ, at 1,528,978 to 1,530,174 _1342 PP_1343: PP_1343 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, at 1,530,287 to 1,531,198 _1343 Position (kb) 1528 1529 1530 1531Strain fitness (log2 ratio) -2 -1 0 1at 1528.920 kb on + strandat 1528.935 kb on + strandat 1528.941 kb on + strandat 1528.954 kb on + strandat 1528.964 kb on + strandat 1530.229 kb on + strandat 1530.229 kb on + strandat 1530.229 kb on + strandat 1530.229 kb on + strandat 1530.251 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol%
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1,528,920 + +0.6
1,528,935 + +0.2
1,528,941 + -1.6
1,528,954 + -0.5
1,528,964 + +0.3
1,530,229 + -1.1
1,530,229 + -1.1
1,530,229 + -1.4
1,530,229 + -2.1
1,530,251 + -0.3

Or see this region's nucleotide sequence