Strain Fitness in Pseudomonas putida KT2440 around PP_1329

Experiment: 1-Pentanol 0.3 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1328 and PP_1329 overlap by 4 nucleotidesPP_1329 and PP_1330 overlap by 4 nucleotidesPP_1330 and PP_1331 overlap by 4 nucleotides PP_1328: PP_1328 - Protein MraZ, at 1,513,362 to 1,513,835 _1328 PP_1329: PP_1329 - Ribosomal RNA small subunit methyltransferase H, at 1,513,832 to 1,514,779 _1329 PP_1330: PP_1330 - Cell division protein FtsL, at 1,514,776 to 1,515,069 _1330 PP_1331: PP_1331 - peptidoglycan DD transpeptidase, at 1,515,066 to 1,516,814 _1331 Position (kb) 1513 1514 1515Strain fitness (log2 ratio) -1 0 1 2at 1513.095 kb on + strandat 1513.138 kb on + strandat 1513.235 kb on + strandat 1513.250 kb on + strandat 1513.299 kb on + strandat 1513.299 kb on + strandat 1513.299 kb on + strandat 1513.301 kb on + strandat 1513.301 kb on + strandat 1513.357 kb on + strandat 1513.546 kb on + strand, within PP_1328at 1513.546 kb on + strand, within PP_1328at 1513.546 kb on + strand, within PP_1328at 1513.546 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol%
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1,513,095 + +0.9
1,513,138 + -1.5
1,513,235 + +1.1
1,513,250 + +0.5
1,513,299 + +0.1
1,513,299 + -1.6
1,513,299 + +0.1
1,513,301 + +0.8
1,513,301 + +0.5
1,513,357 + -0.1
1,513,546 + PP_1328 0.39 +0.5
1,513,546 + PP_1328 0.39 -0.3
1,513,546 + PP_1328 0.39 +0.9
1,513,546 + +1.8

Or see this region's nucleotide sequence