Strain Fitness in Pseudomonas putida KT2440 around PP_1204

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
1,381,391	+		PP_1203	0.13	+0.1
1,381,391	+		PP_1203	0.13	-0.1
1,381,391	+		PP_1203	0.13	+0.2
1,381,392	-		PP_1203	0.13	+0.4
1,381,392	-		PP_1203	0.13	+0.1
1,381,407	-		PP_1203	0.15	+0.1
1,381,407	-		PP_1203	0.15	+1.0
1,381,407	-		PP_1203	0.15	+1.7
1,381,407	-		PP_1203	0.15	-2.4
1,381,490	+		PP_1203	0.23	-0.3
1,381,491	-		PP_1203	0.23	+1.0
1,381,491	-		PP_1203	0.23	-1.1
1,381,532	+		PP_1203	0.26	-0.9
1,381,533	-		PP_1203	0.27	+0.1
1,381,571	+		PP_1203	0.30	-0.5
1,381,571	+		PP_1203	0.30	+0.6
1,381,571	+		PP_1203	0.30	-0.2
1,381,572	-		PP_1203	0.30	-0.2
1,381,572	-		PP_1203	0.30	-0.5
1,381,572	-		PP_1203	0.30	+0.7
1,381,660	+		PP_1203	0.38	-0.8
1,381,661	-		PP_1203	0.39	-0.3
1,381,661	-		PP_1203	0.39	+0.1
1,381,960	+		PP_1203	0.67	+0.4
1,382,000	+		PP_1203	0.70	+0.2
1,382,000	+		PP_1203	0.70	+1.3
1,382,000	+		PP_1203	0.70	+0.1
1,382,001	-		PP_1203	0.71	+0.1
1,382,060	-		PP_1203	0.76	+1.7
1,382,189	+		PP_1203	0.88	-0.3
1,382,339	+				+2.0
1,382,340	-				+0.3
1,382,340	-				-1.3
1,382,340	-				-0.2
1,382,342	+				-0.3
1,382,343	-				+1.1
1,382,385	+				+1.3
1,382,386	-				+3.3
1,382,386	-				-1.7
1,382,386	-				-0.3
1,382,571	+		PP_1204	0.24	+1.1
1,382,635	+		PP_1204	0.31	-0.1
1,382,635	+		PP_1204	0.31	+0.7
1,382,900	+		PP_1204	0.58	-3.2
1,382,900	+		PP_1204	0.58	+1.1
1,382,901	-		PP_1204	0.58	-0.7
1,382,901	-		PP_1204	0.58	+0.7
1,382,901	-		PP_1204	0.58	-0.6
1,383,011	+		PP_1204	0.70	+0.1
1,383,011	+		PP_1204	0.70	+0.3
1,383,032	+		PP_1204	0.72	+1.5
1,383,033	-		PP_1204	0.72	+0.1
1,383,033	-		PP_1204	0.72	+0.7
1,383,033	-		PP_1204	0.72	-0.4
1,383,041	+		PP_1204	0.73	-0.5
1,383,051	-		PP_1204	0.74	+0.8
1,383,162	+		PP_1204	0.86	+1.3
1,383,163	-		PP_1204	0.86	-1.1
1,383,273	+				+0.1
1,383,290	+				-0.9
1,383,290	+				+0.4
1,383,291	-				+0.3
1,383,291	-				+1.0