Strain Fitness in Pseudomonas putida KT2440 around PP_1188

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
1,362,326	-				+1.3
1,362,479	-		PP_1187	0.64	-2.3
1,362,530	+		PP_1187	0.68	+0.3
1,362,531	-		PP_1187	0.68	+0.8
1,362,531	-		PP_1187	0.68	+0.5
1,362,632	+		PP_1187	0.76	+0.3
1,362,739	+		PP_1187	0.84	-1.1
1,362,883	+				-0.5
1,362,883	+				+0.1
1,362,883	+				-0.3
1,362,883	+				-2.2
1,362,962	+				+0.8
1,363,118	+				-0.5
1,363,175	+				+0.3
1,363,246	-				-0.1
1,363,341	+				-1.4
1,363,341	+				-1.2
1,363,341	+				-0.5
1,363,341	+				-1.1
1,363,342	-				-0.4
1,363,342	-				+0.0
1,363,389	+				-0.2
1,363,389	+				-0.4
1,363,390	-				-0.7
1,363,390	-				-0.0
1,363,551	+		PP_1188	0.18	-1.3
1,363,551	+		PP_1188	0.18	-0.3
1,363,552	-		PP_1188	0.18	-0.8
1,363,671	+		PP_1188	0.27	-2.0
1,363,672	-		PP_1188	0.28	-0.8
1,363,716	-		PP_1188	0.31	-1.9
1,363,716	-		PP_1188	0.31	-0.7
1,363,821	+		PP_1188	0.39	+0.0
1,363,821	+		PP_1188	0.39	-0.7
1,363,822	-		PP_1188	0.39	-0.7
1,363,944	+		PP_1188	0.48	+0.4
1,363,945	-		PP_1188	0.48	-1.6
1,363,945	-		PP_1188	0.48	-1.0
1,363,992	+		PP_1188	0.52	-0.9
1,363,992	+		PP_1188	0.52	+0.5
1,363,993	-		PP_1188	0.52	-0.6
1,364,076	+		PP_1188	0.58	-0.9
1,364,077	-		PP_1188	0.58	+0.3
1,364,179	+		PP_1188	0.66	-2.2
1,364,235	+		PP_1188	0.70	-1.4
1,364,236	-		PP_1188	0.70	-0.3
1,364,236	-		PP_1188	0.70	-1.6
1,364,678	+				-0.6
1,364,789	-				-0.0
1,364,836	+				-0.4
1,364,836	+				+0.5
1,364,836	+				+1.4
1,364,836	+				+0.3
1,364,836	+				+1.1
1,364,837	-				+0.4
1,364,837	-				-0.4
1,364,837	-				-0.9
1,364,864	+		PP_1189	0.12	+0.2
1,364,884	+		PP_1189	0.15	-1.4
1,364,885	-		PP_1189	0.15	-0.8
1,364,885	-		PP_1189	0.15	-1.1
1,365,065	+		PP_1189	0.41	+0.2
1,365,065	+		PP_1189	0.41	-0.7
1,365,074	+		PP_1189	0.42	-0.0
1,365,074	+		PP_1189	0.42	-0.7
1,365,074	+		PP_1189	0.42	+0.3
1,365,075	-		PP_1189	0.42	+0.1
1,365,075	-		PP_1189	0.42	+0.5
1,365,371	-		PP_1189	0.85	-0.0
1,365,371	-		PP_1189	0.85	+1.3
1,365,371	-		PP_1189	0.85	-0.7
1,365,462	+				-1.6
1,365,462	+				-0.5
1,365,462	+				+0.6
1,365,462	+				-0.3
1,365,463	-				+1.1
1,365,463	-				-0.9
1,365,463	-				+0.7
1,365,545	+		PP_1190	0.15	-0.5
1,365,546	-		PP_1190	0.15	+0.3
1,365,546	-		PP_1190	0.15	+1.4