Strain Fitness in Pseudomonas putida KT2440 around PP_1036

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
1,182,051	+		PP_1034	0.78	-0.5
1,182,106	+		PP_1034	0.82	-0.0
1,182,106	+		PP_1034	0.82	-0.5
1,182,106	+		PP_1034	0.82	-0.3
1,182,107	-		PP_1034	0.82	+0.6
1,182,107	-		PP_1034	0.82	+0.0
1,182,120	+		PP_1034	0.83	+0.4
1,182,120	+		PP_1034	0.83	+0.7
1,182,226	+				+0.8
1,182,226	+				+0.3
1,182,226	+				-1.8
1,182,928	+				-0.6
1,182,929	-				+0.3
1,182,929	-				-2.6
1,182,929	-				+0.8
1,182,929	-				-1.7
1,182,929	-				+1.2
1,182,944	+				-1.5
1,183,042	+				-1.8
1,183,042	+				-1.0
1,183,043	-				-0.5
1,183,100	-		PP_1036	0.12	+0.1
1,183,100	-		PP_1036	0.12	+1.0
1,183,100	-		PP_1036	0.12	+0.0
1,183,100	-		PP_1036	0.12	-1.9
1,183,100	-		PP_1036	0.12	-2.6
1,183,115	-		PP_1036	0.13	-1.3
1,183,115	-		PP_1036	0.13	+0.6
1,183,234	+		PP_1036	0.21	+1.5
1,183,234	+		PP_1036	0.21	-1.7
1,183,234	+		PP_1036	0.21	-1.3
1,183,235	-		PP_1036	0.21	-0.0
1,183,310	-		PP_1036	0.26	-1.5
1,183,499	-		PP_1036	0.39	-0.3
1,183,499	-		PP_1036	0.39	-1.0
1,183,519	+		PP_1036	0.41	-0.5
1,183,520	-		PP_1036	0.41	-2.1
1,183,520	-		PP_1036	0.41	+0.5
1,183,520	-		PP_1036	0.41	+0.0
1,183,558	+		PP_1036	0.43	-1.3
1,183,559	-		PP_1036	0.43	-0.7
1,183,570	+		PP_1036	0.44	+2.3
1,183,570	+		PP_1036	0.44	-0.3
1,183,571	-		PP_1036	0.44	-0.1
1,183,579	-		PP_1036	0.45	-1.0
1,183,579	-		PP_1036	0.45	-0.7
1,183,594	+		PP_1036	0.46	-1.9
1,183,595	-		PP_1036	0.46	+1.5
1,183,595	-		PP_1036	0.46	-0.3
1,183,597	+		PP_1036	0.46	-0.7
1,183,648	+		PP_1036	0.49	-0.3
1,183,648	+		PP_1036	0.49	-1.3
1,183,648	+		PP_1036	0.49	-0.7
1,183,648	+		PP_1036	0.49	-1.7
1,183,649	-		PP_1036	0.50	-0.5
1,183,753	+		PP_1036	0.57	+1.1
1,183,754	-		PP_1036	0.57	-1.0
1,183,754	-		PP_1036	0.57	-1.0
1,183,754	-		PP_1036	0.57	-0.4
1,183,754	-		PP_1036	0.57	-1.7
1,183,987	+		PP_1036	0.73	-0.9
1,184,027	-				+0.3
1,184,027	-		PP_1036	0.75	-0.9
1,184,027	-		PP_1036	0.75	-0.3
1,184,110	+		PP_1036	0.81	-1.7
1,184,111	-		PP_1036	0.81	+0.2
1,184,111	-		PP_1036	0.81	+1.3
1,184,151	+		PP_1036	0.84	-1.9
1,184,225	-		PP_1036	0.89	+0.5
1,184,313	+				-0.7
1,184,313	+				+0.6
1,184,314	-				+0.3
1,184,384	+				-0.6
1,184,384	+				-2.3
1,184,384	+				-1.3
1,184,384	+				-2.3
1,184,384	+				-0.0
1,184,384	+				-1.6
1,184,384	+				-2.4
1,184,385	-				+2.4
1,184,385	-				+0.1
1,184,385	-				+0.1
1,184,395	-				+0.7
1,184,396	+				+1.5
1,184,396	+				+0.7
1,184,419	+				-0.5
1,184,420	-				+0.1
1,184,551	+				+0.8
1,184,556	+				+0.3
1,184,556	+				+0.7
1,184,567	+				+0.3
1,184,568	-				+0.1
1,184,568	-				-0.9
1,184,716	+				+0.7