Strain Fitness in Pseudomonas putida KT2440 around PP_0936

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
1,077,661	+				-1.0
1,077,828	-				+1.4
1,078,151	+				-0.2
1,078,154	-				-2.4
1,078,154	-				-0.9
1,078,154	-				+0.4
1,078,154	-				-0.1
1,078,154	-				+0.7
1,078,270	+		PP_0936	0.21	+0.9
1,078,271	-		PP_0936	0.21	-0.3
1,078,271	-		PP_0936	0.21	-0.5
1,078,334	+		PP_0936	0.32	-0.4
1,078,334	+		PP_0936	0.32	-0.4
1,078,335	-		PP_0936	0.32	-0.4
1,078,374	+		PP_0936	0.38	+1.1
1,078,374	+		PP_0936	0.38	+0.6
1,078,375	-		PP_0936	0.38	-0.2
1,078,375	-		PP_0936	0.38	-1.8
1,078,375	-		PP_0936	0.38	-0.8
1,078,549	+		PP_0936	0.67	+0.5
1,078,589	-		PP_0936	0.73	-0.6
1,078,639	+		PP_0936	0.81	-0.1
1,078,639	+		PP_0936	0.81	-0.3
1,078,639	+		PP_0936	0.81	-1.5
1,078,640	-		PP_0936	0.82	-1.4
1,078,726	-				-0.4
1,078,726	-				-1.8
1,078,726	-				+2.4
1,078,736	+				-0.3
1,078,736	+				+0.9
1,078,751	-				+0.4
1,078,764	+				+1.2
1,078,764	+				+0.1
1,078,765	-				-1.5
1,078,765	-				-0.1
1,078,765	-				-2.3
1,078,779	+				+1.1
1,078,779	+				-0.5
1,078,779	+				+0.4
1,078,779	+				+0.4
1,078,780	-				-0.4
1,078,780	-				-0.8
1,078,780	-				-2.2
1,078,925	+				-0.3
1,078,926	-				-1.0
1,078,926	-				-1.1
1,078,926	-				-0.6
1,078,930	-				-0.5
1,078,930	-				+1.1
1,078,930	-				-2.0
1,079,068	+		PP_0937	0.18	-0.8
1,079,069	-		PP_0937	0.18	+0.4
1,079,069	-		PP_0937	0.18	-0.3
1,079,172	+		PP_0937	0.25	-2.4
1,079,172	+		PP_0937	0.25	+0.0
1,079,173	-		PP_0937	0.25	-2.5
1,079,173	-		PP_0937	0.25	-2.6
1,079,198	+		PP_0937	0.27	-0.8
1,079,198	+		PP_0937	0.27	-0.4
1,079,421	+		PP_0937	0.42	+0.6
1,079,602	-		PP_0937	0.55	-0.2
1,079,602	-		PP_0937	0.55	-1.8