Experiment: 1-Pentanol 0.3 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0931 and PP_0932 are separated by 15 nucleotides PP_0932 and PP_0933 are separated by 103 nucleotides PP_0933 and PP_0934 are separated by 220 nucleotides
PP_0931: PP_0931 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 1,073,404 to 1,074,855
_0931
PP_0932: PP_0932 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, at 1,074,871 to 1,075,179
_0932
PP_0933: PP_0933 - cell wall structural actin-like protein MreB, at 1,075,283 to 1,076,401
_0933
PP_0934: PP_0934 - Cell shape-determining protein MreC, at 1,076,622 to 1,077,620
_0934
Position (kb)
1075
1076
1077 Strain fitness (log2 ratio)
-2
-1
0
1 at 1076.437 kb on + strand at 1076.437 kb on + strand at 1076.437 kb on + strand at 1076.437 kb on + strand at 1076.437 kb on + strand at 1076.437 kb on + strand at 1076.440 kb on + strand at 1076.440 kb on + strand at 1076.440 kb on + strand at 1076.440 kb on + strand at 1076.440 kb on + strand at 1076.444 kb on + strand at 1076.444 kb on + strand at 1076.444 kb on + strand at 1076.444 kb on + strand at 1076.452 kb on + strand at 1076.452 kb on + strand at 1076.458 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol% remove 1,076,437 + +0.6 1,076,437 + -1.5 1,076,437 + -0.2 1,076,437 + -0.8 1,076,437 + -2.0 1,076,437 + +0.6 1,076,440 + -0.4 1,076,440 + -0.9 1,076,440 + -0.8 1,076,440 + -0.3 1,076,440 + -1.1 1,076,444 + -0.6 1,076,444 + -2.0 1,076,444 + +0.4 1,076,444 + -0.2 1,076,452 + -1.4 1,076,452 + -1.0 1,076,458 + -0.7
Or see this region's nucleotide sequence