Strain Fitness in Pseudomonas putida KT2440 around PP_0933

Experiment: 1-Pentanol 0.3 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0931 and PP_0932 are separated by 15 nucleotidesPP_0932 and PP_0933 are separated by 103 nucleotidesPP_0933 and PP_0934 are separated by 220 nucleotides PP_0931: PP_0931 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 1,073,404 to 1,074,855 _0931 PP_0932: PP_0932 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, at 1,074,871 to 1,075,179 _0932 PP_0933: PP_0933 - cell wall structural actin-like protein MreB, at 1,075,283 to 1,076,401 _0933 PP_0934: PP_0934 - Cell shape-determining protein MreC, at 1,076,622 to 1,077,620 _0934 Position (kb) 1075 1076 1077Strain fitness (log2 ratio) -2 -1 0 1at 1076.437 kb on + strandat 1076.437 kb on + strandat 1076.437 kb on + strandat 1076.437 kb on + strandat 1076.437 kb on + strandat 1076.437 kb on + strandat 1076.440 kb on + strandat 1076.440 kb on + strandat 1076.440 kb on + strandat 1076.440 kb on + strandat 1076.440 kb on + strandat 1076.444 kb on + strandat 1076.444 kb on + strandat 1076.444 kb on + strandat 1076.444 kb on + strandat 1076.452 kb on + strandat 1076.452 kb on + strandat 1076.458 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol%
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1,076,437 + +0.6
1,076,437 + -1.5
1,076,437 + -0.2
1,076,437 + -0.8
1,076,437 + -2.0
1,076,437 + +0.6
1,076,440 + -0.4
1,076,440 + -0.9
1,076,440 + -0.8
1,076,440 + -0.3
1,076,440 + -1.1
1,076,444 + -0.6
1,076,444 + -2.0
1,076,444 + +0.4
1,076,444 + -0.2
1,076,452 + -1.4
1,076,452 + -1.0
1,076,458 + -0.7

Or see this region's nucleotide sequence