Experiment: 1-Pentanol 0.3 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0847 and PP_0848 are separated by 10 nucleotides PP_0848 and PP_0849 are separated by 88 nucleotides PP_0849 and PP_0850 are separated by 28 nucleotides PP_0850 and PP_0851 are separated by 8 nucleotides PP_0851 and PP_0852 overlap by 4 nucleotides
PP_0847: PP_0847 - ferredoxin, at 982,990 to 983,331
_0847
PP_0848: PP_0848 - donor of Fe2+ and regulator of cysteine desulfurase activity, at 983,342 to 983,542
_0848
PP_0849: PP_0849 - Nucleoside diphosphate kinase, at 983,631 to 984,056
_0849
PP_0850: PP_0850 - Dual-specificity RNA methyltransferase RlmN, at 984,085 to 985,230
_0850
PP_0851: PP_0851 - Type IV pili biogenesis protein PilF, at 985,239 to 986,006
_0851
PP_0852: PP_0852 - Transcriptional regulator, Cro/CI family, at 986,003 to 987,010
_0852
Position (kb) 984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 983.339 kb on + strand at 983.339 kb on + strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.365 kb on - strand, within PP_0848 at 983.417 kb on + strand, within PP_0848 at 983.417 kb on + strand, within PP_0848 at 983.418 kb on - strand, within PP_0848 at 983.418 kb on - strand, within PP_0848 at 983.540 kb on + strand at 983.540 kb on + strand at 983.583 kb on + strand at 983.583 kb on + strand at 984.043 kb on + strand at 984.043 kb on + strand at 984.044 kb on - strand at 984.067 kb on - strand at 984.096 kb on + strand at 984.096 kb on + strand at 984.156 kb on + strand at 984.156 kb on + strand at 984.242 kb on + strand, within PP_0850 at 984.242 kb on + strand, within PP_0850 at 984.242 kb on + strand, within PP_0850 at 984.243 kb on - strand, within PP_0850 at 984.243 kb on - strand, within PP_0850 at 984.333 kb on + strand, within PP_0850 at 984.333 kb on + strand, within PP_0850 at 984.334 kb on - strand, within PP_0850 at 984.379 kb on + strand, within PP_0850 at 984.379 kb on + strand, within PP_0850 at 984.380 kb on - strand, within PP_0850 at 984.380 kb on - strand, within PP_0850 at 984.847 kb on + strand, within PP_0850 at 984.847 kb on + strand, within PP_0850 at 984.848 kb on - strand, within PP_0850 at 984.848 kb on - strand, within PP_0850 at 984.889 kb on + strand, within PP_0850 at 984.889 kb on + strand, within PP_0850 at 984.943 kb on + strand, within PP_0850 at 984.959 kb on + strand, within PP_0850 at 985.086 kb on + strand, within PP_0850 at 985.149 kb on + strand at 985.168 kb on + strand at 985.169 kb on - strand at 985.169 kb on - strand at 985.169 kb on - strand at 985.235 kb on + strand at 985.236 kb on - strand at 985.236 kb on - strand at 985.362 kb on + strand, within PP_0851 at 985.362 kb on + strand, within PP_0851 at 985.362 kb on + strand, within PP_0851 at 985.363 kb on - strand, within PP_0851 at 985.363 kb on - strand, within PP_0851 at 985.363 kb on - strand, within PP_0851 at 985.384 kb on - strand, within PP_0851 at 985.543 kb on + strand, within PP_0851 at 985.543 kb on + strand, within PP_0851 at 985.543 kb on + strand, within PP_0851 at 985.544 kb on - strand, within PP_0851 at 985.576 kb on - strand, within PP_0851 at 985.591 kb on - strand, within PP_0851 at 985.653 kb on + strand, within PP_0851 at 985.731 kb on + strand, within PP_0851 at 985.731 kb on + strand, within PP_0851 at 985.731 kb on + strand, within PP_0851 at 985.815 kb on + strand, within PP_0851 at 985.815 kb on + strand, within PP_0851 at 985.815 kb on + strand, within PP_0851 at 985.815 kb on + strand, within PP_0851 at 985.815 kb on + strand, within PP_0851 at 985.815 kb on + strand, within PP_0851 at 985.815 kb on + strand, within PP_0851 at 985.815 kb on + strand, within PP_0851 at 985.815 kb on + strand, within PP_0851 at 985.815 kb on + strand, within PP_0851 at 985.833 kb on + strand, within PP_0851 at 985.833 kb on + strand, within PP_0851 at 985.833 kb on + strand, within PP_0851 at 985.836 kb on + strand, within PP_0851 at 985.836 kb on + strand, within PP_0851 at 985.836 kb on + strand, within PP_0851 at 985.836 kb on + strand, within PP_0851 at 985.836 kb on + strand, within PP_0851 at 985.948 kb on + strand at 985.959 kb on + strand at 985.986 kb on + strand at 985.986 kb on + strand at 986.025 kb on + strand at 986.025 kb on + strand at 986.110 kb on + strand, within PP_0852 at 986.110 kb on + strand, within PP_0852 at 986.179 kb on + strand, within PP_0852 at 986.195 kb on + strand, within PP_0852
Per-strain Table
Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol% remove 983,339 + -0.9 983,339 + -1.5 983,340 - +0.8 983,340 - -2.3 983,340 - -0.8 983,340 - +0.1 983,340 - +0.4 983,365 - PP_0848 0.11 -0.7 983,417 + PP_0848 0.37 +1.2 983,417 + PP_0848 0.37 +1.0 983,418 - PP_0848 0.38 -0.0 983,418 - PP_0848 0.38 +0.7 983,540 + -0.3 983,540 + +0.3 983,583 + +0.3 983,583 + -0.2 984,043 + +0.1 984,043 + -2.1 984,044 - -0.0 984,067 - +0.7 984,096 + -1.9 984,096 + +0.2 984,156 + -2.3 984,156 + -0.0 984,242 + PP_0850 0.14 -0.3 984,242 + PP_0850 0.14 -0.6 984,242 + PP_0850 0.14 -0.9 984,243 - PP_0850 0.14 +1.4 984,243 - PP_0850 0.14 -1.5 984,333 + PP_0850 0.22 -0.4 984,333 + PP_0850 0.22 +1.1 984,334 - PP_0850 0.22 -1.3 984,379 + PP_0850 0.26 -0.2 984,379 + PP_0850 0.26 -1.3 984,380 - PP_0850 0.26 -2.9 984,380 - PP_0850 0.26 -0.9 984,847 + PP_0850 0.66 -0.3 984,847 + PP_0850 0.66 -0.1 984,848 - PP_0850 0.67 -0.4 984,848 - PP_0850 0.67 -0.7 984,889 + PP_0850 0.70 -1.3 984,889 + PP_0850 0.70 -1.3 984,943 + PP_0850 0.75 -3.4 984,959 + PP_0850 0.76 -0.9 985,086 + PP_0850 0.87 -0.4 985,149 + -0.9 985,168 + -2.0 985,169 - -2.9 985,169 - -1.5 985,169 - -0.4 985,235 + +1.1 985,236 - +0.1 985,236 - +0.6 985,362 + PP_0851 0.16 +0.5 985,362 + PP_0851 0.16 +0.6 985,362 + PP_0851 0.16 -0.8 985,363 - PP_0851 0.16 -2.4 985,363 - PP_0851 0.16 -0.5 985,363 - PP_0851 0.16 +0.3 985,384 - PP_0851 0.19 +2.1 985,543 + PP_0851 0.40 +0.7 985,543 + PP_0851 0.40 +0.8 985,543 + PP_0851 0.40 -0.4 985,544 - PP_0851 0.40 -1.6 985,576 - PP_0851 0.44 -0.6 985,591 - PP_0851 0.46 +0.4 985,653 + PP_0851 0.54 -0.0 985,731 + PP_0851 0.64 +0.3 985,731 + PP_0851 0.64 +1.1 985,731 + PP_0851 0.64 -0.8 985,815 + PP_0851 0.75 -0.3 985,815 + PP_0851 0.75 +0.6 985,815 + PP_0851 0.75 +0.1 985,815 + PP_0851 0.75 +0.9 985,815 + PP_0851 0.75 +0.6 985,815 + PP_0851 0.75 +0.5 985,815 + PP_0851 0.75 +0.3 985,815 + PP_0851 0.75 +0.9 985,815 + PP_0851 0.75 -0.9 985,815 + PP_0851 0.75 +0.5 985,833 + PP_0851 0.77 +1.0 985,833 + PP_0851 0.77 +0.6 985,833 + PP_0851 0.77 +0.3 985,836 + PP_0851 0.78 -1.3 985,836 + PP_0851 0.78 +0.2 985,836 + PP_0851 0.78 +1.0 985,836 + PP_0851 0.78 +1.1 985,836 + PP_0851 0.78 +0.7 985,948 + -2.7 985,959 + +0.3 985,986 + -0.7 985,986 + -1.8 986,025 + +1.4 986,025 + -0.8 986,110 + PP_0852 0.11 +0.5 986,110 + PP_0852 0.11 -0.8 986,179 + PP_0852 0.17 -1.6 986,195 + PP_0852 0.19 -1.3
Or see this region's nucleotide sequence