Strain Fitness in Pseudomonas putida KT2440 around PP_0824

Experiment: 1-Pentanol 0.3 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0823 and PP_0824 are separated by 126 nucleotidesPP_0824 and PP_0825 overlap by 4 nucleotidesPP_0825 and PP_0826 overlap by 7 nucleotides PP_0823: PP_0823 - Selenide, water dikinase, at 961,380 to 962,414 _0823 PP_0824: PP_0824 - phosphonate transport system-binding protein, at 962,541 to 963,395 _0824 PP_0825: PP_0825 - phosphonates import ATP-binding protein, at 963,392 to 964,201 _0825 PP_0826: PP_0826 - phosphonate ABC transporter, permease protein, at 964,195 to 965,022 _0826 Position (kb) 962 963 964Strain fitness (log2 ratio) -2 -1 0 1 2at 961.576 kb on + strand, within PP_0823at 961.577 kb on - strand, within PP_0823at 961.585 kb on + strand, within PP_0823at 961.640 kb on + strand, within PP_0823at 961.641 kb on - strand, within PP_0823at 961.664 kb on - strand, within PP_0823at 961.664 kb on - strand, within PP_0823at 961.664 kb on - strand, within PP_0823at 961.895 kb on - strand, within PP_0823at 961.895 kb on - strand, within PP_0823at 961.943 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.185 kb on + strand, within PP_0823at 962.386 kb on + strandat 962.387 kb on - strandat 962.414 kb on + strandat 962.414 kb on + strandat 962.450 kb on - strandat 962.450 kb on - strandat 962.466 kb on - strandat 962.480 kb on + strandat 962.481 kb on - strandat 962.481 kb on - strandat 962.483 kb on - strandat 962.483 kb on - strandat 962.725 kb on + strand, within PP_0824at 962.725 kb on + strand, within PP_0824at 962.849 kb on - strand, within PP_0824at 962.849 kb on - strand, within PP_0824at 962.986 kb on - strand, within PP_0824at 963.008 kb on + strand, within PP_0824at 963.009 kb on - strand, within PP_0824at 963.024 kb on + strand, within PP_0824at 963.025 kb on - strand, within PP_0824at 963.189 kb on + strand, within PP_0824at 963.190 kb on - strand, within PP_0824at 963.199 kb on - strand, within PP_0824at 963.290 kb on + strand, within PP_0824at 963.291 kb on - strand, within PP_0824at 963.348 kb on + strandat 963.348 kb on + strandat 963.348 kb on + strandat 963.348 kb on + strandat 963.349 kb on - strandat 963.349 kb on - strandat 963.349 kb on - strandat 963.349 kb on - strandat 963.422 kb on + strandat 963.450 kb on + strandat 963.479 kb on - strand, within PP_0825at 963.887 kb on + strand, within PP_0825at 963.887 kb on + strand, within PP_0825at 963.955 kb on + strand, within PP_0825at 963.956 kb on - strand, within PP_0825at 963.956 kb on - strand, within PP_0825at 964.023 kb on + strand, within PP_0825at 964.265 kb on + strandat 964.266 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol%
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961,576 + PP_0823 0.19 -0.5
961,577 - PP_0823 0.19 +0.1
961,585 + PP_0823 0.20 +0.4
961,640 + PP_0823 0.25 +0.4
961,641 - PP_0823 0.25 -0.6
961,664 - PP_0823 0.27 -1.9
961,664 - PP_0823 0.27 +0.4
961,664 - PP_0823 0.27 +0.0
961,895 - PP_0823 0.50 +0.7
961,895 - PP_0823 0.50 -1.4
961,943 + PP_0823 0.54 +0.9
962,140 + PP_0823 0.73 -2.3
962,140 + PP_0823 0.73 +0.7
962,140 + PP_0823 0.73 -0.3
962,140 + PP_0823 0.73 +0.4
962,140 + PP_0823 0.73 -0.4
962,140 + PP_0823 0.73 +0.4
962,140 + PP_0823 0.73 -0.1
962,140 + PP_0823 0.73 -1.1
962,140 + PP_0823 0.73 -1.3
962,141 - PP_0823 0.74 -0.5
962,141 - PP_0823 0.74 -1.0
962,141 - PP_0823 0.74 -0.6
962,141 - PP_0823 0.74 -0.7
962,141 - PP_0823 0.74 -0.6
962,141 - PP_0823 0.74 +0.2
962,141 - PP_0823 0.74 -0.5
962,141 - PP_0823 0.74 -1.3
962,141 - PP_0823 0.74 -1.0
962,141 - PP_0823 0.74 -0.1
962,185 + PP_0823 0.78 +0.4
962,386 + +0.1
962,387 - +2.6
962,414 + -0.3
962,414 + -2.2
962,450 - -0.6
962,450 - +0.6
962,466 - +0.2
962,480 + +0.0
962,481 - -0.5
962,481 - -0.7
962,483 - +0.7
962,483 - +0.3
962,725 + PP_0824 0.22 -1.0
962,725 + PP_0824 0.22 -0.3
962,849 - PP_0824 0.36 +0.2
962,849 - PP_0824 0.36 +1.6
962,986 - PP_0824 0.52 -0.9
963,008 + PP_0824 0.55 -0.0
963,009 - PP_0824 0.55 +0.6
963,024 + PP_0824 0.56 -0.5
963,025 - PP_0824 0.57 -0.1
963,189 + PP_0824 0.76 +0.5
963,190 - PP_0824 0.76 +0.6
963,199 - PP_0824 0.77 +0.7
963,290 + PP_0824 0.88 -0.1
963,291 - PP_0824 0.88 -0.1
963,348 + +0.4
963,348 + +0.7
963,348 + +1.1
963,348 + -0.5
963,349 - -0.2
963,349 - -0.2
963,349 - -1.8
963,349 - +0.5
963,422 + +0.0
963,450 + +0.2
963,479 - PP_0825 0.11 +1.4
963,887 + PP_0825 0.61 +0.3
963,887 + PP_0825 0.61 +0.1
963,955 + PP_0825 0.70 -0.1
963,956 - PP_0825 0.70 +0.5
963,956 - PP_0825 0.70 -0.1
964,023 + PP_0825 0.78 +0.2
964,265 + -0.2
964,266 - -0.1

Or see this region's nucleotide sequence